About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_61229-0.10
Bpl_scaf_61229-0.20
Bpl_scaf_61229-0.6PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_61229-0.8
Bpl_scaf_61230-0.0
Bpl_scaf_61230-1.0
Bpl_scaf_61230-1.12
Bpl_scaf_61230-1.13
Bpl_scaf_61230-1.14OPSIN
Bpl_scaf_61230-2.9
Bpl_scaf_61230-3.2ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_61230-3.8
Bpl_scaf_61230-4.3BONUS, ISOFORM C-RELATED
Bpl_scaf_61230-4.4RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
Bpl_scaf_61230-5.11ANION EXCHANGE PROTEIN
Bpl_scaf_61230-6.3
Bpl_scaf_61230-6.7PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
Bpl_scaf_61230-6.8ANION EXCHANGE PROTEIN
Bpl_scaf_61237-0.10
Bpl_scaf_61237-0.17DNA HELICASE RECQ FAMILY MEMBER
Bpl_scaf_61237-0.18TENASCIN
Bpl_scaf_61237-0.19ACID PHOSPHATASE-RELATED
Bpl_scaf_61237-0.20PROTEIN SIDEKICK
Bpl_scaf_61237-0.8
Bpl_scaf_61237-0.9
Bpl_scaf_61248-0.0INHIBITOR OF APOPTOSIS
Bpl_scaf_61262-0.11
Bpl_scaf_61262-0.12ANKYRIN REPEAT-CONTAINING
Bpl_scaf_61262-0.8
Bpl_scaf_61268-0.3
Bpl_scaf_61268-0.8ACROSIN-RELATED
Bpl_scaf_61268-0.9CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_61278-0.11
Bpl_scaf_61278-0.16THAP DOMAIN PROTEIN
Bpl_scaf_61278-0.17
Bpl_scaf_61283-0.12
Bpl_scaf_61283-0.13DNA HELICASE RECQ FAMILY MEMBER
Bpl_scaf_61283-0.18CADHERIN-23
Bpl_scaf_61299-0.12
Bpl_scaf_61299-0.16CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_61299-0.17
Bpl_scaf_61299-0.18SIDESTEP PROTEIN
Bpl_scaf_613-0.0
Bpl_scaf_61303-0.0
Bpl_scaf_61303-0.6MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Bpl_scaf_61303-1.0
Bpl_scaf_61313-0.5ATP-DEPENDENT RNA AND DNA HELICASE
Bpl_scaf_61313-0.6NUCLEOTIDE KINASE
Bpl_scaf_61313-1.11E3 UBIQUITIN-PROTEIN LIGASE COP1
Bpl_scaf_61313-1.12WD REPEAT PROTEIN
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