About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_60944-0.3UNCHARACTERIZED
Bpl_scaf_60944-0.5SI:CH211-108C17.2-RELATED-RELATED
Bpl_scaf_60962-0.16CENTROSOMAL PROTEIN 2
Bpl_scaf_60970-0.0
Bpl_scaf_60970-0.3
Bpl_scaf_60985-0.6
Bpl_scaf_60986-0.4TETRASPANIN
Bpl_scaf_60986-0.6DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER
Bpl_scaf_60986-0.7
Bpl_scaf_60986-1.3
Bpl_scaf_60986-1.4
Bpl_scaf_60986-2.3
Bpl_scaf_60986-3.6PROMININ PROM PROTEIN
Bpl_scaf_60986-4.7HEAT SHOCK FACTOR 2-BINDING PROTEIN
Bpl_scaf_60986-4.8S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
Bpl_scaf_60995-0.5APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_61001-0.0
Bpl_scaf_61032-0.11TYROSINE-PROTEIN KINASE RECEPTOR
Bpl_scaf_61032-0.8TYROSINE-PROTEIN KINASE RECEPTOR
Bpl_scaf_61060-0.9LEUCYL-TRNA SYNTHETASE
Bpl_scaf_61068-0.0
Bpl_scaf_61068-0.4BONUS, ISOFORM C-RELATED
Bpl_scaf_61078-0.4N-LINKED OLIGOSACCHARIDE PROCESSING
Bpl_scaf_61078-0.9
Bpl_scaf_61090-0.8PEPTIDASE
Bpl_scaf_61095-0.0
Bpl_scaf_611-0.10
Bpl_scaf_611-0.13
Bpl_scaf_611-0.3
Bpl_scaf_611-1.3
Bpl_scaf_611-2.10NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
Bpl_scaf_611-2.17MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
Bpl_scaf_611-2.26PATCHED-RELATED
Bpl_scaf_611-2.9RNA HELICASE
Bpl_scaf_61105-0.10
Bpl_scaf_61105-0.16
Bpl_scaf_61110-0.0INHIBITOR OF APOPTOSIS
Bpl_scaf_61110-0.16DRAB11-RELATED
Bpl_scaf_61110-0.3SERINE PROTEASE INHIBITOR, SERPIN
Bpl_scaf_61121-0.1026S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
Bpl_scaf_61121-0.13APOLIPOPROTEIN D
Bpl_scaf_61121-0.14PROTEIN STAR
Bpl_scaf_61121-0.27NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED
Bpl_scaf_61121-0.4MYOTROPHIN
Bpl_scaf_61122-0.11
Bpl_scaf_61122-0.4
Bpl_scaf_61122-0.6
Bpl_scaf_61122-0.9
Bpl_scaf_61122-1.13
Bpl_scaf_61122-1.14NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED
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