Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_60762-1.24 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| Bpl_scaf_60762-1.25 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 |
| Bpl_scaf_60762-1.33 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_60763-0.3 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_60763-0.4 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_60763-0.9 | UNCHARACTERIZED |
| Bpl_scaf_60763-1.7 | |
| Bpl_scaf_60763-2.23 | |
| Bpl_scaf_60763-2.30 | |
| Bpl_scaf_60763-2.31 | |
| Bpl_scaf_60763-2.51 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_60763-2.52 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_60763-2.53 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_60764-0.1 | |
| Bpl_scaf_60766-0.3 | |
| Bpl_scaf_60766-0.7 | LITHOSTATHINE |
| Bpl_scaf_60768-0.0 | |
| Bpl_scaf_6077-0.0 | |
| Bpl_scaf_60771-0.0 | |
| Bpl_scaf_60773-0.6 | GLYCOPROTEIN HORMONE BETA CHAIN |
| Bpl_scaf_60773-1.1 | GLYCOPROTEIN HORMONE ALPHA-2 |
| Bpl_scaf_60773-2.10 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
| Bpl_scaf_60773-2.3 | |
| Bpl_scaf_60773-2.7 | ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN |
| Bpl_scaf_60773-3.12 | MASK PROTEIN |
| Bpl_scaf_60773-3.13 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_60773-3.15 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_60773-3.30 | ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN |
| Bpl_scaf_60773-3.31 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
| Bpl_scaf_60774-0.10 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_60774-0.11 | CELL DIVISION PROTEIN KINASE |
| Bpl_scaf_60774-1.16 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_60774-1.8 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| Bpl_scaf_60774-10.1 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_60774-10.5 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_60774-11.9 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Bpl_scaf_60774-4.0 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| Bpl_scaf_60774-4.3 | |
| Bpl_scaf_60774-5.0 | |
| Bpl_scaf_60774-8.19 | ZGC:195170 |
| Bpl_scaf_60774-8.22 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_60774-8.25 | |
| Bpl_scaf_60774-8.35 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_60774-8.36 | |
| Bpl_scaf_60774-8.4 | ZGC:195170 |
| Bpl_scaf_60774-9.15 | |
| Bpl_scaf_60774-9.4 | |
| Bpl_scaf_60774-9.6 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_60776-0.8 | INTERFERON-INDUCED PROTEIN 44 |
| Bpl_scaf_60777-0.0 |
