Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_61360-0.1 | |
| Bpl_scaf_61365-1.16 | C1ORF73 PROTEIN |
| Bpl_scaf_61365-1.17 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Bpl_scaf_61365-1.18 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| Bpl_scaf_61365-1.31 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| Bpl_scaf_61365-1.32 | COMM DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_61365-1.7 | |
| Bpl_scaf_61371-0.3 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_61373-0.1 | BETA-HEXOSAMINIDASE |
| Bpl_scaf_61377-0.5 | |
| Bpl_scaf_61377-2.5 | |
| Bpl_scaf_61377-2.6 | CARBOHYDRATE SULFOTRANSFERASE |
| Bpl_scaf_61377-2.7 | |
| Bpl_scaf_61377-2.9 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_61378-0.11 | |
| Bpl_scaf_61378-0.12 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| Bpl_scaf_61378-0.25 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| Bpl_scaf_61378-1.14 | CALCIUM-BINDING PROTEIN 39-RELATED |
| Bpl_scaf_61378-1.22 | RAS-RELATED PROTEIN RAB |
| Bpl_scaf_61378-1.24 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_61378-2.7 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_61378-3.3 | RAGULATOR COMPLEX PROTEIN LAMTOR4 |
| Bpl_scaf_61378-3.5 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_61378-5.14 | AUTOPHAGY PROTEIN 16-LIKE |
| Bpl_scaf_61378-5.16 | |
| Bpl_scaf_61378-5.17 | |
| Bpl_scaf_61378-5.18 | |
| Bpl_scaf_61378-7.10 | SH2 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_61378-7.11 | - |
| Bpl_scaf_61378-7.15 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_61378-7.28 | UNCHARACTERIZED |
| Bpl_scaf_61378-8.11 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_61378-8.8 | FLAVIN REDUCTASE (NADPH) |
| Bpl_scaf_61378-9.6 | |
| Bpl_scaf_61378-9.8 | |
| Bpl_scaf_61387-0.1 | SOLUTE CARRIER FAMILY 17 |
| Bpl_scaf_61387-1.11 | SOLUTE CARRIER FAMILY 17 |
| Bpl_scaf_61387-2.12 | XYLOSIDE XYLOSYLTRANSFERASE 1 |
| Bpl_scaf_61387-2.16 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| Bpl_scaf_61387-2.19 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35 |
| Bpl_scaf_61387-2.32 | MIGRATION AND INVASION-INHIBITORY PROTEIN |
| Bpl_scaf_61387-2.35 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| Bpl_scaf_61387-2.36 | |
| Bpl_scaf_61392-0.0 | |
| Bpl_scaf_61394-0.4 | ACROSIN-RELATED |
| Bpl_scaf_61401-0.0 | |
| Bpl_scaf_61401-0.34 | |
| Bpl_scaf_61401-0.35 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_61401-0.36 | |
| Bpl_scaf_61401-0.5 |
