Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_5969-0.0 | |
| Bpl_scaf_5969-0.12 | |
| Bpl_scaf_5969-0.14 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5969-0.15 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5969-0.25 | |
| Bpl_scaf_5969-0.26 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Bpl_scaf_5969-1.5 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_59690-0.2 | |
| Bpl_scaf_59692-2.0 | G PROTEIN-COUPLED RECEPTOR |
| Bpl_scaf_59692-3.0 | |
| Bpl_scaf_59692-3.16 | |
| Bpl_scaf_59692-3.19 | |
| Bpl_scaf_59692-3.20 | |
| Bpl_scaf_59692-3.23 | |
| Bpl_scaf_59692-3.24 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_59692-3.25 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_59692-3.8 | |
| Bpl_scaf_59704-2.0 | |
| Bpl_scaf_59704-2.13 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| Bpl_scaf_59704-3.3 | |
| Bpl_scaf_59704-3.8 | RAC GTPASE-ACTIVATING PROTEIN 1 |
| Bpl_scaf_59704-4.14 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_59704-4.15 | |
| Bpl_scaf_59704-4.5 | |
| Bpl_scaf_59717-0.3 | |
| Bpl_scaf_59745-0.3 | PROTON CHANNEL OTOP |
| Bpl_scaf_59755-0.2 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_59773-0.0 | |
| Bpl_scaf_59823-0.3 | |
| Bpl_scaf_59823-0.5 | |
| Bpl_scaf_59823-0.6 | |
| Bpl_scaf_59830-0.5 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
| Bpl_scaf_59830-1.7 | CHROMATIN TARGET OF PRMT1 PROTEIN |
| Bpl_scaf_59830-11.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_59830-12.12 | ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1 |
| Bpl_scaf_59830-12.21 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_59830-2.15 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
| Bpl_scaf_59830-2.16 | COLLAGEN ALPHA |
| Bpl_scaf_59830-3.1 | |
| Bpl_scaf_59830-3.3 | DULLARD PROTEIN PHOSPHATASE |
| Bpl_scaf_59830-4.0 | PROTEIN NATD1 |
| Bpl_scaf_59830-4.4 | CENTROSOMAL PROTEIN OF 78 KDA |
| Bpl_scaf_59830-4.5 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| Bpl_scaf_59830-5.5 | DNAJ-LIKE-2, ISOFORM A-RELATED |
| Bpl_scaf_59830-6.7 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
| Bpl_scaf_59830-6.8 | WD40 REPEAT PROTEIN |
| Bpl_scaf_59830-9.5 | ALKALINE CERAMIDASE 3 |
| Bpl_scaf_59830-9.6 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Bpl_scaf_59830-9.7 | UNCHARACTERIZED |
| Bpl_scaf_59853-0.12 | OS10G0105400 PROTEIN |
