Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_59479-1.32 | |
| Bpl_scaf_59485-0.3 | PROPERDIN |
| Bpl_scaf_59490-0.0 | |
| Bpl_scaf_59490-0.5 | |
| Bpl_scaf_59490-0.7 | BEIGE/BEACH-RELATED |
| Bpl_scaf_59490-1.19 | PROTEIN INTURNED |
| Bpl_scaf_59490-1.8 | AMINO ACID TRANSPORTER |
| Bpl_scaf_59494-0.14 | |
| Bpl_scaf_59494-0.17 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| Bpl_scaf_59494-0.18 | KREMEN PROTEIN |
| Bpl_scaf_59494-0.42 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_59494-1.13 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_59494-1.31 | |
| Bpl_scaf_59494-1.32 | |
| Bpl_scaf_59494-1.33 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_59494-2.10 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_59494-2.17 | FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN |
| Bpl_scaf_595-0.2 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5950-0.12 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Bpl_scaf_5950-0.13 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_59500-0.0 | |
| Bpl_scaf_59503-0.0 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_59505-0.2 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| Bpl_scaf_59505-1.23 | THROMBOSPONDIN |
| Bpl_scaf_59505-1.24 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Bpl_scaf_59505-2.24 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_59505-2.25 | PROTEIN PSIB-RELATED-RELATED |
| Bpl_scaf_59505-2.26 | MULTICOPPER OXIDASE-RELATED |
| Bpl_scaf_59511-1.1 | PARANEOPLASTIC ANTIGEN |
| Bpl_scaf_59511-1.4 | PARANEOPLASTIC ANTIGEN |
| Bpl_scaf_59511-1.7 | SERTA DOMAIN-CONTAINING PROTEIN 4 |
| Bpl_scaf_59511-2.3 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| Bpl_scaf_59517-0.3 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_59527-1.11 | MYOTROPHIN |
| Bpl_scaf_59527-2.1 | |
| Bpl_scaf_59527-2.13 | |
| Bpl_scaf_59527-2.22 | MYOTROPHIN |
| Bpl_scaf_59536-0.5 | LD24721P |
| Bpl_scaf_59537-0.6 | WD REPEAT-CONTAINING PROTEIN 17 |
| Bpl_scaf_59537-1.6 | MYELIN PROTEOLIPID |
| Bpl_scaf_59540-1.10 | ENDONUCLEASE-RELATED |
| Bpl_scaf_59540-1.8 | 4-NITROPHENYLPHOSPHATASE-RELATED |
| Bpl_scaf_59540-1.9 | FATTY ACID DESATURASE 2 |
| Bpl_scaf_59540-2.14 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_59540-2.16 | |
| Bpl_scaf_59540-2.22 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_59540-2.24 | ELONGATOR COMPLEX PROTEIN 6 |
| Bpl_scaf_59540-2.25 | |
| Bpl_scaf_59549-0.1 | |
| Bpl_scaf_59553-1.2 | SIMILAR TO RIKEN CDNA E130308A19 |
