Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_59427-1.13 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_59427-1.15 | |
| Bpl_scaf_59427-1.19 | |
| Bpl_scaf_59427-1.20 | |
| Bpl_scaf_59434-0.8 | |
| Bpl_scaf_59434-1.0 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_59434-1.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_59434-1.13 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_59434-1.19 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_59434-1.2 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_59439-0.12 | PROTEIN EVA-1 |
| Bpl_scaf_59439-0.19 | |
| Bpl_scaf_59439-1.13 | NUCLEAR RESPIRATORY FACTOR 1 |
| Bpl_scaf_59439-1.14 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Bpl_scaf_59439-1.32 | |
| Bpl_scaf_59439-1.33 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Bpl_scaf_59448-0.0 | |
| Bpl_scaf_59459-0.10 | MACROGLOBULIN / COMPLEMENT |
| Bpl_scaf_59459-0.5 | |
| Bpl_scaf_59459-0.7 | |
| Bpl_scaf_59459-1.14 | DEDICATOR OF CYTOKINESIS DOCK |
| Bpl_scaf_59459-1.25 | MACROGLOBULIN / COMPLEMENT |
| Bpl_scaf_59459-1.31 | DEDICATOR OF CYTOKINESIS DOCK |
| Bpl_scaf_59466-0.0 | |
| Bpl_scaf_59469-1.0 | |
| Bpl_scaf_59469-1.16 | E1A-BINDING PROTEIN P400-RELATED |
| Bpl_scaf_59469-1.28 | |
| Bpl_scaf_59469-1.29 | |
| Bpl_scaf_59469-1.30 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| Bpl_scaf_59469-1.33 | HELICASE SRCAP-RELATED |
| Bpl_scaf_59469-1.35 | HELICASE SRCAP-RELATED |
| Bpl_scaf_59469-1.36 | HELICASE SRCAP-RELATED |
| Bpl_scaf_59475-0.0 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_59478-0.0 | - |
| Bpl_scaf_59478-0.6 | - |
| Bpl_scaf_59478-1.1 | |
| Bpl_scaf_59478-1.13 | NADH-CYTOCHROME B5 REDUCTASE |
| Bpl_scaf_59478-1.14 | NADH-CYTOCHROME B5 REDUCTASE |
| Bpl_scaf_59478-1.6 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_59479-0.0 | |
| Bpl_scaf_59479-0.17 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_59479-0.18 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_59479-0.4 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_59479-0.6 | |
| Bpl_scaf_59479-1.16 | TETRASPANIN |
| Bpl_scaf_59479-1.18 | TETRASPANIN |
| Bpl_scaf_59479-1.19 | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN |
| Bpl_scaf_59479-1.27 | TETRASPANIN |
| Bpl_scaf_59479-1.29 | |
| Bpl_scaf_59479-1.31 |
