Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_596-2.8 | |
| Bpl_scaf_59648-0.10 | COLLAGEN ALPHA |
| Bpl_scaf_59648-0.13 | COLLAGEN ALPHA |
| Bpl_scaf_59648-0.2 | |
| Bpl_scaf_59648-0.4 | |
| Bpl_scaf_59648-0.6 | |
| Bpl_scaf_59648-1.5 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| Bpl_scaf_59648-1.6 | ANNEXIN |
| Bpl_scaf_59648-10.1 | TUBULIN |
| Bpl_scaf_59648-10.3 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_59648-11.6 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| Bpl_scaf_59648-11.7 | GLYCOSYLTRANSFERASE |
| Bpl_scaf_59648-12.17 | OTU DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_59648-12.20 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| Bpl_scaf_59648-12.21 | EXPORTIN-T/LOS1 |
| Bpl_scaf_59648-12.37 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Bpl_scaf_59648-12.4 | |
| Bpl_scaf_59648-12.42 | GLOBIN-LIKE PROTEIN |
| Bpl_scaf_59648-12.43 | |
| Bpl_scaf_59648-12.44 | 60S RIBOSOMAL PROTEIN L18A |
| Bpl_scaf_59648-2.7 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Bpl_scaf_59648-3.3 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| Bpl_scaf_59648-3.4 | |
| Bpl_scaf_59648-3.5 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_59648-4.5 | ALPHA-GLUCOSIDASE |
| Bpl_scaf_59648-5.10 | |
| Bpl_scaf_59648-5.16 | CADHERIN-87A |
| Bpl_scaf_59648-5.6 | LD33804P |
| Bpl_scaf_59648-6.11 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 |
| Bpl_scaf_59648-7.11 | LRRGT00142-RELATED |
| Bpl_scaf_59648-7.5 | PX SERINE/THREONINE KINASE PXK |
| Bpl_scaf_59648-7.7 | ENOLASE (DUF1399) |
| Bpl_scaf_59648-8.2 | |
| Bpl_scaf_59648-8.6 | RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2 |
| Bpl_scaf_59648-9.6 | SI:DKEY-32E6.3 |
| Bpl_scaf_59648-9.8 | NUCLEAR RESPIRATORY FACTOR 1 |
| Bpl_scaf_59648-9.9 | ADENOSYLHOMOCYSTEINASE |
| Bpl_scaf_59649-0.10 | |
| Bpl_scaf_59649-0.5 | CYTOCHROME P450 FAMILY 4 |
| Bpl_scaf_59649-0.8 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
| Bpl_scaf_59649-0.9 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
| Bpl_scaf_59649-1.5 | PROTEIN AF-9 HOMOLOG |
| Bpl_scaf_59651-0.3 | |
| Bpl_scaf_59652-0.3 | EG:80H7.2 PROTEIN |
| Bpl_scaf_59652-1.9 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| Bpl_scaf_59652-2.0 | |
| Bpl_scaf_59652-2.24 | SIMILAR TO HYPOTHETICAL PROTEIN |
| Bpl_scaf_59652-2.25 | PROPERDIN |
| Bpl_scaf_59652-2.29 | PROPERDIN |
| Bpl_scaf_59655-0.4 |
