Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_59553-1.4 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_59553-2.1 | |
| Bpl_scaf_59553-2.18 | |
| Bpl_scaf_59553-2.23 | |
| Bpl_scaf_59553-2.24 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Bpl_scaf_59553-2.27 | PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN |
| Bpl_scaf_59553-2.28 | REGULATOR OF G-PROTEIN SIGNALING PROTEIN-LIKE |
| Bpl_scaf_59553-2.31 | PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN |
| Bpl_scaf_59553-2.33 | |
| Bpl_scaf_59555-0.0 | |
| Bpl_scaf_59555-0.1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_59562-0.2 | HISTONE H1 |
| Bpl_scaf_59562-1.3 | |
| Bpl_scaf_59562-2.11 | FORKHEAD BOX PROTEIN N1 |
| Bpl_scaf_59562-2.12 | STAC |
| Bpl_scaf_59562-2.7 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_59562-2.8 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72 |
| Bpl_scaf_59562-2.9 | HELICASE WITH DEATH DOMAIN-RELATED |
| Bpl_scaf_5958-0.15 | BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 LIKE 1 |
| Bpl_scaf_5958-0.21 | TETRASPANIN |
| Bpl_scaf_5958-0.22 | |
| Bpl_scaf_5958-0.4 | |
| Bpl_scaf_5958-0.5 | ZINC FINGER TRANSCRIPTION FACTOR TRPS1 |
| Bpl_scaf_5958-0.8 | HILLARIN |
| Bpl_scaf_5959-0.1 | |
| Bpl_scaf_5959-1.20 | |
| Bpl_scaf_5959-1.9 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Bpl_scaf_5959-2.3 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_5959-2.6 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_5959-4.4 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5959-5.2 | |
| Bpl_scaf_5959-6.3 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_5959-6.4 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_5959-7.12 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Bpl_scaf_5959-7.24 | DNA TOPOISOMERASE/GYRASE |
| Bpl_scaf_5959-7.25 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| Bpl_scaf_596-0.14 | TRANSLATION ELONGATION FACTOR-RELATED |
| Bpl_scaf_596-0.15 | METHYLTRANSFERASE |
| Bpl_scaf_596-0.16 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_596-0.25 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_596-0.3 | |
| Bpl_scaf_596-0.6 | |
| Bpl_scaf_596-0.9 | |
| Bpl_scaf_596-1.11 | ENDONUCLEASE RELATED |
| Bpl_scaf_596-1.6 | |
| Bpl_scaf_596-1.7 | - |
| Bpl_scaf_596-2.10 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_596-2.17 | |
| Bpl_scaf_596-2.3 | LD33804P |
| Bpl_scaf_596-2.5 |
