Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_60035-0.4 | UNCHARACTERIZED |
| Bpl_scaf_6005-0.12 | REGUCALCIN |
| Bpl_scaf_6005-1.17 | |
| Bpl_scaf_6005-1.18 | |
| Bpl_scaf_6005-1.19 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| Bpl_scaf_6005-1.2 | |
| Bpl_scaf_6005-1.20 | |
| Bpl_scaf_60051-0.0 | |
| Bpl_scaf_60051-0.1 | |
| Bpl_scaf_60057-0.11 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| Bpl_scaf_60057-0.12 | LAMIN DM0-RELATED |
| Bpl_scaf_60057-0.9 | LAMIN DM0-RELATED |
| Bpl_scaf_60065-0.1 | |
| Bpl_scaf_60065-0.2 | |
| Bpl_scaf_60067-0.5 | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 |
| Bpl_scaf_60067-0.6 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Bpl_scaf_60067-1.11 | ELONGATION FACTOR TS |
| Bpl_scaf_60067-1.12 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| Bpl_scaf_60067-11.21 | GENE 9195-RELATED-RELATED |
| Bpl_scaf_60067-11.22 | GENE 9195-RELATED-RELATED |
| Bpl_scaf_60067-11.23 | GENE, 32742-RELATED-RELATED |
| Bpl_scaf_60067-12.4 | COILED-COIL DOMAIN-CONTAINING PROTEIN 13 |
| Bpl_scaf_60067-14.15 | TESTIS-EXPRESSED PROTEIN 49 |
| Bpl_scaf_60067-14.3 | RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_60067-14.7 | CHAPERONIN |
| Bpl_scaf_60067-15.12 | |
| Bpl_scaf_60067-15.9 | OXIDASE/PEROXIDASE |
| Bpl_scaf_60067-2.2 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 |
| Bpl_scaf_60067-3.10 | |
| Bpl_scaf_60067-3.11 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Bpl_scaf_60067-3.15 | |
| Bpl_scaf_60067-4.2 | HEH2P |
| Bpl_scaf_60067-4.20 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Bpl_scaf_60067-4.21 | VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT |
| Bpl_scaf_60067-6.10 | |
| Bpl_scaf_60067-6.11 | |
| Bpl_scaf_60067-6.12 | |
| Bpl_scaf_60067-6.13 | |
| Bpl_scaf_60067-7.13 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| Bpl_scaf_60067-7.14 | CELL CYCLE CONTROL PROTEIN CWF22-RELATED |
| Bpl_scaf_60067-7.26 | ZINC FINGER PROTEIN |
| Bpl_scaf_60067-7.7 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_60067-8.19 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_60067-8.7 | |
| Bpl_scaf_60067-8.8 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| Bpl_scaf_60067-9.10 | AGAP008005-PA |
| Bpl_scaf_60067-9.2 | |
| Bpl_scaf_60067-9.8 | DNAJ HOMOLOG SUBFAMILY C MEMBER 7 |
| Bpl_scaf_60067-9.9 | |
| Bpl_scaf_60077-0.8 | APICAL PROTEIN/SHROOM-RELATED |
