Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_57519-1.9 | UNCHARACTERIZED |
| Bpl_scaf_57519-2.14 | METALLOPROTEASE INHIBITOR |
| Bpl_scaf_57519-2.15 | METALLOPROTEASE INHIBITOR |
| Bpl_scaf_57519-2.16 | PROTEIN PHOSPHATASE |
| Bpl_scaf_57519-2.6 | |
| Bpl_scaf_57523-0.1 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_57530-0.5 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_57530-2.8 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| Bpl_scaf_57616-0.3 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| Bpl_scaf_57616-1.4 | CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED |
| Bpl_scaf_57616-1.5 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_57616-1.6 | |
| Bpl_scaf_57616-2.21 | GEM-ASSOCIATED PROTEIN 6 |
| Bpl_scaf_57616-2.23 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_57616-2.25 | TRANSMEMBRANE CHANNEL-RELATED |
| Bpl_scaf_57616-2.31 | |
| Bpl_scaf_57616-2.32 | SNF2/RAD54 FAMILY MEMBER |
| Bpl_scaf_57616-2.33 | SNF2/RAD54 FAMILY MEMBER |
| Bpl_scaf_57617-0.2 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Bpl_scaf_57618-0.4 | ZGC:172121 |
| Bpl_scaf_57618-0.5 | |
| Bpl_scaf_57618-1.6 | UNCONVENTIONAL MYOSIN-XVI |
| Bpl_scaf_57618-2.4 | |
| Bpl_scaf_57618-2.6 | |
| Bpl_scaf_57618-3.16 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_57618-3.21 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| Bpl_scaf_57618-3.33 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| Bpl_scaf_57618-3.35 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1 |
| Bpl_scaf_57618-4.0 | |
| Bpl_scaf_57618-4.5 | SHORT STATURE HOMEOBOX |
| Bpl_scaf_57618-4.8 | OUTER SEGMENT 5 |
| Bpl_scaf_57618-5.0 | |
| Bpl_scaf_57618-5.2 | MSL2-RELATED |
| Bpl_scaf_57618-5.3 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
| Bpl_scaf_57618-6.6 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
| Bpl_scaf_57618-6.7 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| Bpl_scaf_57618-6.9 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| Bpl_scaf_57618-7.8 | WD40 REPEAT PROTEIN |
| Bpl_scaf_57618-9.2 | |
| Bpl_scaf_57619-0.3 | |
| Bpl_scaf_57620-0.1 | |
| Bpl_scaf_57621-0.3 | TRYPTOPHAN 2,3-DIOXYGENASE |
| Bpl_scaf_57627-0.8 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_57627-1.3 | SOLEUCYL-TRNA SYNTHETASE |
| Bpl_scaf_57627-2.10 | INTEGRAL MEMBRANE PROTEIN GPR137 |
| Bpl_scaf_57627-2.11 | SPLICING FACTOR SF3A-RELATED |
| Bpl_scaf_57627-2.7 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| Bpl_scaf_57627-3.8 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Bpl_scaf_57628-0.1 | OS10G0105400 PROTEIN |
| Bpl_scaf_57630-0.0 | HOMEOBOX PROTEIN |
