About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_57724-1.20TRANSCRIPTION INITIATION FACTOR TFIID
Bpl_scaf_57724-1.21EXTRA SPINDLE POLES 1-RELATED
Bpl_scaf_57724-2.5CEREBELLIN-RELATED
Bpl_scaf_57724-4.4
Bpl_scaf_57726-0.5
Bpl_scaf_57745-0.0CYTOCHROME P450 508A4-RELATED
Bpl_scaf_57753-0.2INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_57753-0.4DNA POLYMERASE
Bpl_scaf_57760-0.4
Bpl_scaf_57761-1.0NUCLEAR HORMONE RECEPTOR
Bpl_scaf_57761-1.6PROTEIN CBG26694
Bpl_scaf_57761-3.3
Bpl_scaf_57761-3.8BASIGIN RELATED
Bpl_scaf_57761-4.14SPHINGOMYELINASE FAMILY MEMBER
Bpl_scaf_57761-4.16GLUTATHIONE SYNTHETASE
Bpl_scaf_57761-4.2
Bpl_scaf_57761-4.21
Bpl_scaf_57761-4.24UNCHARACTERIZED
Bpl_scaf_5777-0.3BONUS, ISOFORM C-RELATED
Bpl_scaf_57777-0.1CELL FATE DETERMINING PROTEIN MAB21-RELATED
Bpl_scaf_57784-0.4RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_57790-0.4INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_57790-0.6INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_57796-0.10PROTEIN TORNADO 1
Bpl_scaf_578-0.2
Bpl_scaf_578-0.5
Bpl_scaf_578-1.0EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED
Bpl_scaf_578-1.7T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Bpl_scaf_578-2.12THAP DOMAIN PROTEIN
Bpl_scaf_578-2.14
Bpl_scaf_578-2.16
Bpl_scaf_578-2.5
Bpl_scaf_57804-0.23MULTI-COPPER OXIDASE
Bpl_scaf_57804-0.3
Bpl_scaf_57815-0.10INHIBITOR OF APOPTOSIS
Bpl_scaf_57815-0.5
Bpl_scaf_57815-0.9MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_57825-1.4DNA HELICASE RECQ FAMILY MEMBER
Bpl_scaf_57825-3.4IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_57825-4.7IONOTROPIC GLUTAMATE RECEPTOR
Bpl_scaf_57825-5.2PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_57834-0.3
Bpl_scaf_57839-0.1
Bpl_scaf_57839-0.2
Bpl_scaf_57839-0.30
Bpl_scaf_57839-0.31
Bpl_scaf_57839-0.4
Bpl_scaf_57839-0.5
Bpl_scaf_57839-0.6
Bpl_scaf_5784-0.0EXPRESSED PROTEIN
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