Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_57332-1.2 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_57332-2.5 | |
| Bpl_scaf_57332-2.9 | ORGANIC ANION TRANSPORTER |
| Bpl_scaf_57332-3.2 | AGAP008221-PA |
| Bpl_scaf_57332-4.2 | |
| Bpl_scaf_57332-6.10 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_57332-6.9 | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II |
| Bpl_scaf_57339-0.43 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57339-0.44 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57339-0.45 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57355-0.10 | |
| Bpl_scaf_57355-0.11 | DNA POLYMERASE |
| Bpl_scaf_57355-0.6 | |
| Bpl_scaf_57366-0.0 | |
| Bpl_scaf_57366-0.13 | |
| Bpl_scaf_57366-0.4 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_57366-0.9 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_57381-0.15 | |
| Bpl_scaf_57381-0.17 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 |
| Bpl_scaf_57381-0.7 | - |
| Bpl_scaf_57392-0.17 | |
| Bpl_scaf_57392-0.19 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57392-0.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57392-0.21 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57392-0.22 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_57400-0.14 | |
| Bpl_scaf_57400-0.15 | |
| Bpl_scaf_57400-0.23 | |
| Bpl_scaf_57400-0.24 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_57404-1.9 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
| Bpl_scaf_57423-0.4 | |
| Bpl_scaf_57423-0.5 | |
| Bpl_scaf_57423-1.14 | |
| Bpl_scaf_57423-1.15 | |
| Bpl_scaf_57423-1.16 | |
| Bpl_scaf_57423-1.19 | - |
| Bpl_scaf_57423-1.6 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_57424-0.7 | DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_57424-0.8 | LIPID PHOSPHATE PHOSPHATASE |
| Bpl_scaf_57424-1.10 | PYM PROTEIN |
| Bpl_scaf_57424-1.11 | GLYCOSYLTRANSFERASE-LIKE 1 |
| Bpl_scaf_57424-1.12 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| Bpl_scaf_57424-1.24 | DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_57424-1.26 | DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_57424-1.9 | PYM PROTEIN |
| Bpl_scaf_57424-2.2 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Bpl_scaf_57424-2.3 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_57424-3.3 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_57424-3.4 | |
| Bpl_scaf_57424-3.8 |
