Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_57478-1.0 | |
| Bpl_scaf_57479-0.0 | IMMUNOGLOBULIN |
| Bpl_scaf_57483-0.3 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_57484-0.15 | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 |
| Bpl_scaf_57484-0.7 | SOLUTE CARRIER FAMILY 35 |
| Bpl_scaf_57484-1.0 | MULTI-COPPER OXIDASE |
| Bpl_scaf_57484-1.21 | |
| Bpl_scaf_57484-10.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_57484-10.4 | UNCHARACTERIZED |
| Bpl_scaf_57484-12.4 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| Bpl_scaf_57484-13.0 | BARDET-BIEDL SYNDROME 10 PROTEIN |
| Bpl_scaf_57484-13.10 | TONSOKU-LIKE PROTEIN |
| Bpl_scaf_57484-13.12 | |
| Bpl_scaf_57484-13.9 | ENOYL-COA HYDRATASE-RELATED |
| Bpl_scaf_57484-14.21 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
| Bpl_scaf_57484-14.22 | MYOTROPHIN |
| Bpl_scaf_57484-15.2 | TEASHIRT-RELATED |
| Bpl_scaf_57484-15.20 | ZINC FINGER PROTEIN |
| Bpl_scaf_57484-16.34 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| Bpl_scaf_57484-16.35 | - |
| Bpl_scaf_57484-16.6 | ZINC FINGER PROTEIN 142 |
| Bpl_scaf_57484-17.2 | |
| Bpl_scaf_57484-17.6 | CENTROMERE PROTEIN T |
| Bpl_scaf_57484-17.7 | UNCHARACTERIZED |
| Bpl_scaf_57484-18.0 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| Bpl_scaf_57484-18.6 | UNCHARACTERIZED |
| Bpl_scaf_57484-2.17 | FANCONI-ASSOCIATED NUCLEASE 1 |
| Bpl_scaf_57484-2.20 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| Bpl_scaf_57484-2.21 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| Bpl_scaf_57484-3.4 | |
| Bpl_scaf_57484-4.6 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| Bpl_scaf_57484-4.8 | |
| Bpl_scaf_57484-5.5 | SACSIN |
| Bpl_scaf_57484-5.6 | UNCHARACTERIZED |
| Bpl_scaf_57484-6.3 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_57484-7.4 | CONTACTIN 5 |
| Bpl_scaf_57484-8.7 | |
| Bpl_scaf_57484-9.0 | |
| Bpl_scaf_57484-9.5 | ZGC:195170 |
| Bpl_scaf_57489-0.5 | DOPAMINE BETA HYDROXYLASE RELATED |
| Bpl_scaf_57493-0.6 | |
| Bpl_scaf_57493-0.9 | DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_57493-1.0 | |
| Bpl_scaf_57507-0.2 | OS10G0105400 PROTEIN |
| Bpl_scaf_57511-0.0 | |
| Bpl_scaf_57514-0.0 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Bpl_scaf_57519-0.1 | COLLAGEN ALPHA |
| Bpl_scaf_57519-0.5 | |
| Bpl_scaf_57519-1.15 | ZINC METALLOPROTEINASE-RELATED |
| Bpl_scaf_57519-1.16 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
