Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_026645-T1 | |
LLU|FUN_026646-T1 | RGM DOMAIN FAMILY MEMBER DRAG-1 |
LLU|FUN_026647-T1 | |
LLU|FUN_026648-T1 | |
LLU|FUN_026649-T1 | |
LLU|FUN_026650-T1 | RGM DOMAIN FAMILY MEMBER DRAG-1 |
LLU|FUN_026651-T1 | |
LLU|FUN_026652-T1 | |
LLU|FUN_026653-T1 | UNCHARACTERIZED |
LLU|FUN_026654-T1 | |
LLU|FUN_026655-T1 | ALCOHOL DEHYDROGENASE RELATED |
LLU|FUN_026656-T1 | LD21662P |
LLU|FUN_026657-T1 | |
LLU|FUN_026658-T1 | |
LLU|FUN_026659-T1 | UNCHARACTERIZED DUF1167 |
LLU|FUN_026660-T1 | UNCHARACTERIZED DUF1167 |
LLU|FUN_026661-T1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
LLU|FUN_026662-T1 | |
LLU|FUN_026663-T1 | |
LLU|FUN_026664-T1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
LLU|FUN_026665-T1 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL |
LLU|FUN_026666-T1 | RNA POLYMERASE II CTD PHOSPHATASE |
LLU|FUN_026667-T1 | CENTROMERE PROTEIN L |
LLU|FUN_026668-T1 | DEOXYNUCLEOSIDE KINASE |
LLU|FUN_026669-T1 | DEOXYNUCLEOSIDE KINASE |
LLU|FUN_026670-T1 | |
LLU|FUN_026671-T1 | |
LLU|FUN_026672-T1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
LLU|FUN_026673-T1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24 |
LLU|FUN_026674-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026675-T1 | ZINC FINGER PROTEIN |
LLU|FUN_026676-T1 | |
LLU|FUN_026677-T1 | - |
LLU|FUN_026678-T1 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
LLU|FUN_026679-T1 | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 |
LLU|FUN_026680-T1 | |
LLU|FUN_026681-T1 | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT |
LLU|FUN_026682-T1 | SUZ DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_026683-T1 | |
LLU|FUN_026684-T1 | |
LLU|FUN_026685-T1 | PROTEIN AF-9 HOMOLOG |
LLU|FUN_026686-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N |
LLU|FUN_026687-T1 | MACROGLOBULIN / COMPLEMENT |
LLU|FUN_026688-T1 | MACROGLOBULIN / COMPLEMENT |
LLU|FUN_026689-T1 | |
LLU|FUN_026690-T1 | |
LLU|FUN_026691-T1 | |
LLU|FUN_026692-T1 | |
LLU|FUN_026693-T1 | |
LLU|FUN_026694-T1 |