About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_026344-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
LLU|FUN_026345-T1
LLU|FUN_026346-T1
LLU|FUN_026347-T1
LLU|FUN_026348-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_026349-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_026350-T1
LLU|FUN_026351-T1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
LLU|FUN_026352-T1ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
LLU|FUN_026353-T1STEROL DESATURASE
LLU|FUN_026354-T1XK-RELATED PROTEIN
LLU|FUN_026355-T1
LLU|FUN_026356-T1
LLU|FUN_026357-T1
LLU|FUN_026358-T1
LLU|FUN_026359-T1GH11358P
LLU|FUN_026360-T1
LLU|FUN_026361-T1STIMULATOR OF INTERFERON GENES PROTEIN
LLU|FUN_026362-T1
LLU|FUN_026363-T1SOLUTE CARRIER FAMILY 2
LLU|FUN_026364-T1TRANSMEMBRANE PROTEIN 201
LLU|FUN_026365-T1PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
LLU|FUN_026366-T1ARM REPEAT SUPERFAMILY PROTEIN
LLU|FUN_026367-T1VEZATIN
LLU|FUN_026368-T1SIGMA 1-TYPE OPIOID RECEPTOR-RELATED
LLU|FUN_026369-T1
LLU|FUN_026370-T1REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1
LLU|FUN_026371-T1PACHYTENE CHECKPOINT PROTEIN 2
LLU|FUN_026372-T1PACHYTENE CHECKPOINT PROTEIN 2
LLU|FUN_026373-T1BROMODOMAIN CONTAINING PROTEIN
LLU|FUN_026374-T1ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
LLU|FUN_026375-T1ACETYL-COA HYDROLASE-RELATED
LLU|FUN_026376-T1SMALL VASOHIBIN-BINDING PROTEIN
LLU|FUN_026377-T1CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
LLU|FUN_026378-T1
LLU|FUN_026379-T1
LLU|FUN_026380-T1ANOCTAMIN
LLU|FUN_026381-T1SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
LLU|FUN_026382-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
LLU|FUN_026383-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
LLU|FUN_026384-T15-HYDROXYTRYPTAMINE RECEPTOR
LLU|FUN_026385-T1
LLU|FUN_026386-T1
LLU|FUN_026387-T1
LLU|FUN_026388-T1
LLU|FUN_026389-T1
LLU|FUN_026390-T1
LLU|FUN_026391-T1
LLU|FUN_026392-T1
LLU|FUN_026393-T1
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