Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_026344-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_026345-T1 | |
LLU|FUN_026346-T1 | |
LLU|FUN_026347-T1 | |
LLU|FUN_026348-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_026349-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
LLU|FUN_026350-T1 | |
LLU|FUN_026351-T1 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
LLU|FUN_026352-T1 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
LLU|FUN_026353-T1 | STEROL DESATURASE |
LLU|FUN_026354-T1 | XK-RELATED PROTEIN |
LLU|FUN_026355-T1 | |
LLU|FUN_026356-T1 | |
LLU|FUN_026357-T1 | |
LLU|FUN_026358-T1 | |
LLU|FUN_026359-T1 | GH11358P |
LLU|FUN_026360-T1 | |
LLU|FUN_026361-T1 | STIMULATOR OF INTERFERON GENES PROTEIN |
LLU|FUN_026362-T1 | |
LLU|FUN_026363-T1 | SOLUTE CARRIER FAMILY 2 |
LLU|FUN_026364-T1 | TRANSMEMBRANE PROTEIN 201 |
LLU|FUN_026365-T1 | PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
LLU|FUN_026366-T1 | ARM REPEAT SUPERFAMILY PROTEIN |
LLU|FUN_026367-T1 | VEZATIN |
LLU|FUN_026368-T1 | SIGMA 1-TYPE OPIOID RECEPTOR-RELATED |
LLU|FUN_026369-T1 | |
LLU|FUN_026370-T1 | REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 |
LLU|FUN_026371-T1 | PACHYTENE CHECKPOINT PROTEIN 2 |
LLU|FUN_026372-T1 | PACHYTENE CHECKPOINT PROTEIN 2 |
LLU|FUN_026373-T1 | BROMODOMAIN CONTAINING PROTEIN |
LLU|FUN_026374-T1 | ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED |
LLU|FUN_026375-T1 | ACETYL-COA HYDROLASE-RELATED |
LLU|FUN_026376-T1 | SMALL VASOHIBIN-BINDING PROTEIN |
LLU|FUN_026377-T1 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
LLU|FUN_026378-T1 | |
LLU|FUN_026379-T1 | |
LLU|FUN_026380-T1 | ANOCTAMIN |
LLU|FUN_026381-T1 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
LLU|FUN_026382-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
LLU|FUN_026383-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
LLU|FUN_026384-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_026385-T1 | |
LLU|FUN_026386-T1 | |
LLU|FUN_026387-T1 | |
LLU|FUN_026388-T1 | |
LLU|FUN_026389-T1 | |
LLU|FUN_026390-T1 | |
LLU|FUN_026391-T1 | |
LLU|FUN_026392-T1 | |
LLU|FUN_026393-T1 |