About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_026394-T1
LLU|FUN_026395-T1
LLU|FUN_026396-T1
LLU|FUN_026397-T1PDF RECEPTOR-LIKE PROTEIN-RELATED
LLU|FUN_026398-T1PDF RECEPTOR-LIKE PROTEIN-RELATED
LLU|FUN_026399-T1ZINC FINGER PROTEIN
LLU|FUN_026400-T1SPERMATOGENESIS-ASSOCIATED PROTEIN 48
LLU|FUN_026401-T1DPY-19-LIKE 1, LIKE (H. SAPIENS)
LLU|FUN_026402-T1RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_026404-T1ARP2/3 COMPLEX 34 KDA SUBUNIT
LLU|FUN_026405-T1PROTEIN MIS12 HOMOLOG
LLU|FUN_026406-T1PROTEIN CBG20567
LLU|FUN_026407-T1SEPIAPTERIN REDUCTASE
LLU|FUN_026408-T110 KDA HEAT SHOCK PROTEIN
LLU|FUN_026409-T160 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL
LLU|FUN_026410-T1
LLU|FUN_026411-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_026412-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_026413-T1
LLU|FUN_026414-T1
LLU|FUN_026415-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
LLU|FUN_026416-T1
LLU|FUN_026417-T1
LLU|FUN_026418-T1ANION EXCHANGE PROTEIN
LLU|FUN_026419-T1RHOMBOID-RELATED PROTEIN
LLU|FUN_026420-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
LLU|FUN_026421-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
LLU|FUN_026422-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_026423-T1
LLU|FUN_026424-T1INNEXIN
LLU|FUN_026425-T1INNEXIN
LLU|FUN_026426-T1ENOS INTERACTING PROTEIN
LLU|FUN_026427-T1MICROTUBULE ASSOCIATED PROTEIN XMAP215
LLU|FUN_026428-T1KREV INTERACTION TRAPPED 1-RELATED
LLU|FUN_026429-T1LIPID PHOSPHATE PHOSPHATASE
LLU|FUN_026430-T1LIPID PHOSPHATE PHOSPHATASE
LLU|FUN_026431-T1
LLU|FUN_026432-T1
LLU|FUN_026433-T1LIPID PHOSPHATE PHOSPHATASE
LLU|FUN_026434-T1CALCYPHOSIN
LLU|FUN_026435-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_026436-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_026437-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_026438-T1
LLU|FUN_026439-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_026440-T1
LLU|FUN_026441-T1
LLU|FUN_026442-T1
LLU|FUN_026443-T1
LLU|FUN_026444-T1
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