Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_026495-T1 | |
LLU|FUN_026496-T1 | CADHERIN-87A |
LLU|FUN_026497-T1 | |
LLU|FUN_026498-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_026499-T1 | |
LLU|FUN_026500-T1 | |
LLU|FUN_026501-T1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
LLU|FUN_026502-T1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
LLU|FUN_026503-T1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
LLU|FUN_026504-T1 | ADP RIBOSYLATION FACTOR-RELATED |
LLU|FUN_026505-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 |
LLU|FUN_026506-T1 | ADP RIBOSYLATION FACTOR-RELATED |
LLU|FUN_026507-T1 | |
LLU|FUN_026508-T1 | |
LLU|FUN_026509-T1 | |
LLU|FUN_026510-T1 | IMPORTIN-7, 8, 11 |
LLU|FUN_026511-T1 | RIBOPHORIN I |
LLU|FUN_026512-T1 | ZINC FINGER PROTEIN RLF |
LLU|FUN_026513-T1 | |
LLU|FUN_026514-T1 | INTELECTIN |
LLU|FUN_026515-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_026516-T1 | |
LLU|FUN_026517-T1 | |
LLU|FUN_026518-T1 | |
LLU|FUN_026519-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
LLU|FUN_026520-T1 | |
LLU|FUN_026521-T1 | |
LLU|FUN_026522-T1 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE |
LLU|FUN_026523-T1 | |
LLU|FUN_026524-T1 | AGAP008228-PA |
LLU|FUN_026525-T1 | PROTEIN PHOSPHATASE |
LLU|FUN_026526-T1 | KEREN-RELATED |
LLU|FUN_026527-T1 | OS02G0815200 PROTEIN |
LLU|FUN_026528-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
LLU|FUN_026529-T1 | |
LLU|FUN_026530-T1 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
LLU|FUN_026531-T1 | |
LLU|FUN_026532-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
LLU|FUN_026533-T1 | INOSITOL POLYPHOSPHATE KINASE |
LLU|FUN_026534-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
LLU|FUN_026535-T1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA |
LLU|FUN_026536-T1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2 |
LLU|FUN_026537-T1 | HISTONE H2A |
LLU|FUN_026538-T1 | |
LLU|FUN_026539-T1 | |
LLU|FUN_026540-T1 | |
LLU|FUN_026541-T1 | |
LLU|FUN_026542-T1 | |
LLU|FUN_026543-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_026544-T1 |