Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_026745-T1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
LLU|FUN_026746-T1 | D123 PROTEIN |
LLU|FUN_026747-T1 | D123 PROTEIN |
LLU|FUN_026748-T1 | |
LLU|FUN_026749-T1 | |
LLU|FUN_026750-T1 | |
LLU|FUN_026751-T1 | |
LLU|FUN_026752-T1 | PROTEIN TRANSPORT PROTEIN SEC23 |
LLU|FUN_026753-T1 | EG:114D9.1 PROTEIN-RELATED |
LLU|FUN_026754-T1 | COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30 |
LLU|FUN_026755-T1 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
LLU|FUN_026756-T1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
LLU|FUN_026757-T1 | |
LLU|FUN_026758-T1 | |
LLU|FUN_026759-T1 | |
LLU|FUN_026760-T1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
LLU|FUN_026761-T1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
LLU|FUN_026762-T1 | UNCHARACTERIZED |
LLU|FUN_026763-T1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
LLU|FUN_026764-T1 | 4.1 G PROTEIN |
LLU|FUN_026765-T1 | ZINC FINGER PROTEIN 532-RELATED |
LLU|FUN_026766-T1 | |
LLU|FUN_026767-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026768-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026769-T1 | |
LLU|FUN_026770-T1 | |
LLU|FUN_026771-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026772-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026773-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
LLU|FUN_026774-T1 | |
LLU|FUN_026775-T1 | - |
LLU|FUN_026776-T1 | |
LLU|FUN_026777-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_026778-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
LLU|FUN_026779-T1 | |
LLU|FUN_026780-T1 | GH08155P |
LLU|FUN_026781-T1 | AGAP011099-PA |
LLU|FUN_026782-T1 | CHITIN SYNTHASE |
LLU|FUN_026783-T1 | |
LLU|FUN_026784-T1 | AGAP011099-PA |
LLU|FUN_026785-T1 | |
LLU|FUN_026786-T1 | |
LLU|FUN_026787-T1 | |
LLU|FUN_026788-T1 | |
LLU|FUN_026789-T1 | |
LLU|FUN_026790-T1 | |
LLU|FUN_026791-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
LLU|FUN_026792-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_026793-T1 | |
LLU|FUN_026794-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |