Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56339-11.34 | TRNA-DIHYDROURIDINE SYNTHASE |
| Bpl_scaf_56339-11.35 | PRENYLTRANSFERASES |
| Bpl_scaf_56339-12.26 | |
| Bpl_scaf_56339-12.27 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
| Bpl_scaf_56339-12.9 | USP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56339-13.12 | ENDONUCLEASE-RELATED |
| Bpl_scaf_56339-14.6 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56339-14.7 | |
| Bpl_scaf_56339-15.14 | DIPHTHINE SYNTHASE |
| Bpl_scaf_56339-15.15 | GLYCOSYLTRANSFERASE |
| Bpl_scaf_56339-15.27 | UBIQUITIN-PROTEIN LIGASE E3C |
| Bpl_scaf_56339-15.29 | |
| Bpl_scaf_56339-15.30 | |
| Bpl_scaf_56339-16.10 | RAD54-LIKE |
| Bpl_scaf_56339-16.11 | POLYCOMB GROUP PROTEIN |
| Bpl_scaf_56339-16.12 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| Bpl_scaf_56339-16.13 | WD REPEAT DOMAIN-RELATED |
| Bpl_scaf_56339-2.11 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_56339-2.15 | |
| Bpl_scaf_56339-2.16 | |
| Bpl_scaf_56339-2.5 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_56339-3.11 | MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN |
| Bpl_scaf_56339-3.6 | FMRFAMIDE RECEPTOR-RELATED |
| Bpl_scaf_56339-3.8 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
| Bpl_scaf_56339-4.1 | |
| Bpl_scaf_56339-4.5 | SERINE/THREONINE-PROTEIN KINASE TAO |
| Bpl_scaf_56339-5.10 | PROTEIN CBG13728 |
| Bpl_scaf_56339-5.12 | CT120 PROTEIN |
| Bpl_scaf_56339-5.4 | CT120 PROTEIN |
| Bpl_scaf_56339-5.6 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56339-5.7 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56339-6.11 | |
| Bpl_scaf_56339-6.4 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| Bpl_scaf_56339-7.19 | GAMMA-SECRETASE-ACTIVATING PROTEIN |
| Bpl_scaf_56339-7.20 | GAMMA-SECRETASE-ACTIVATING PROTEIN |
| Bpl_scaf_56339-7.21 | CEREBELLIN-RELATED |
| Bpl_scaf_56339-7.23 | RAN GTPASE-ACTIVATING PROTEIN 1 |
| Bpl_scaf_56339-7.8 | TRANSLOCON-ASSOCIATED PROTEIN, DELTA SUBUNIT |
| Bpl_scaf_56339-8.15 | SPHINGOSINE KINASE |
| Bpl_scaf_56339-8.16 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_56339-8.17 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_56339-9.8 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_56341-0.1 | |
| Bpl_scaf_56341-0.10 | |
| Bpl_scaf_56343-0.0 | 26S PROTESOME SUBUNIT 6 |
| Bpl_scaf_56343-0.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_56344-1.13 | |
| Bpl_scaf_56344-1.6 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| Bpl_scaf_56344-1.8 | TRANSLATION INITIATION FACTOR-RELATED |
| Bpl_scaf_56344-2.12 | PUTATIVE-RELATED |
