Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56233-0.8 | |
| Bpl_scaf_56233-1.15 | |
| Bpl_scaf_56233-1.16 | HRAS-LIKE SUPPRESSOR - RELATED |
| Bpl_scaf_56233-1.5 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_56233-4.3 | UNCHARACTERIZED |
| Bpl_scaf_56233-4.4 | CYCLIN |
| Bpl_scaf_56233-5.15 | |
| Bpl_scaf_56233-5.6 | HOMEOBOX PROTEIN ENGRAILED |
| Bpl_scaf_56233-6.4 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56233-6.6 | HOMEOBOX PROTEIN ENGRAILED |
| Bpl_scaf_56233-7.0 | |
| Bpl_scaf_56233-8.1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_56233-8.11 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_56233-8.14 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_56236-0.0 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_56238-0.2 | |
| Bpl_scaf_56239-0.12 | |
| Bpl_scaf_56239-0.13 | PROLINE IMINOPEPTIDASE |
| Bpl_scaf_56239-1.10 | PROLINE IMINOPEPTIDASE |
| Bpl_scaf_56239-2.15 | PROPERDIN |
| Bpl_scaf_56239-2.18 | |
| Bpl_scaf_56239-2.21 | TRANSMEMBRANE PROTEIN 2-RELATED |
| Bpl_scaf_56239-2.22 | TRANSMEMBRANE PROTEIN 2-RELATED |
| Bpl_scaf_56254-0.6 | |
| Bpl_scaf_56254-0.7 | |
| Bpl_scaf_56254-1.8 | |
| Bpl_scaf_56254-1.9 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
| Bpl_scaf_56254-2.3 | ANTIGEN BSP, PUTATIVE-RELATED |
| Bpl_scaf_56254-2.7 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Bpl_scaf_56270-0.1 | ZINC FINGER PROTEIN |
| Bpl_scaf_56270-0.12 | AGAP007109-PA |
| Bpl_scaf_56270-0.9 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_56270-1.14 | |
| Bpl_scaf_56270-1.5 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56270-1.7 | |
| Bpl_scaf_56270-2.4 | |
| Bpl_scaf_56270-2.5 | |
| Bpl_scaf_56270-2.6 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_56270-2.9 | PROTEIN SIDEKICK |
| Bpl_scaf_56279-1.1 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_56279-1.16 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_56279-1.4 | PROTEIN STAR |
| Bpl_scaf_56279-1.8 | |
| Bpl_scaf_56279-2.16 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_56279-2.23 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_56279-2.25 | |
| Bpl_scaf_5628-0.0 | |
| Bpl_scaf_5628-0.3 | GUANYLYL CYCLASE |
| Bpl_scaf_56280-0.0 | |
| Bpl_scaf_56290-0.6 | CARBONIC ANHYDRASE |
