Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56031-0.13 | HEAVY PROTEIN, PUTATIVE-RELATED |
| Bpl_scaf_56031-0.4 | |
| Bpl_scaf_56031-0.7 | NG5 |
| Bpl_scaf_56042-0.12 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_56042-0.13 | BRYOPORIN |
| Bpl_scaf_56052-0.5 | |
| Bpl_scaf_56056-0.0 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_56056-0.4 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Bpl_scaf_56065-0.0 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
| Bpl_scaf_56065-0.22 | |
| Bpl_scaf_56065-0.23 | ADP RIBOSYLATION FACTOR-RELATED |
| Bpl_scaf_56065-0.43 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
| Bpl_scaf_56074-0.0 | |
| Bpl_scaf_56074-0.10 | |
| Bpl_scaf_56074-0.13 | |
| Bpl_scaf_56074-0.14 | |
| Bpl_scaf_56074-0.21 | PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 |
| Bpl_scaf_56074-0.3 | F-BOX ONLY PROTEIN |
| Bpl_scaf_56091-0.7 | |
| Bpl_scaf_56091-0.8 | |
| Bpl_scaf_56100-0.12 | |
| Bpl_scaf_56100-0.15 | SCHLAFEN |
| Bpl_scaf_56100-0.4 | |
| Bpl_scaf_56100-0.5 | |
| Bpl_scaf_56100-0.7 | |
| Bpl_scaf_56100-0.9 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Bpl_scaf_56116-0.2 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Bpl_scaf_56132-0.15 | |
| Bpl_scaf_56142-0.11 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_56142-0.12 | PROTEIN TORNADO 1 |
| Bpl_scaf_56142-0.13 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_56151-0.0 | |
| Bpl_scaf_56151-0.11 | NG5 |
| Bpl_scaf_56151-0.13 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
| Bpl_scaf_56151-0.15 | NG5 |
| Bpl_scaf_56160-0.17 | |
| Bpl_scaf_56160-0.19 | ISLET CELL AUTOANTIGEN 1 |
| Bpl_scaf_56160-0.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_56161-0.13 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_56161-0.17 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_56161-0.5 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
| Bpl_scaf_56162-0.9 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| Bpl_scaf_56162-1.1 | |
| Bpl_scaf_56162-1.10 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| Bpl_scaf_56162-1.13 | |
| Bpl_scaf_56162-1.9 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Bpl_scaf_56162-3.0 | |
| Bpl_scaf_56162-3.12 | |
| Bpl_scaf_56162-3.13 | |
| Bpl_scaf_56162-4.4 | TNF RECEPTOR ASSOCIATED FACTOR |
