Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56290-1.11 | CARBONIC ANHYDRASE |
| Bpl_scaf_56290-1.6 | CENTROMERE PROTEIN V |
| Bpl_scaf_56290-2.20 | DELTEX-RELATED |
| Bpl_scaf_56290-2.21 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_56290-2.22 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_56290-2.23 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_56291-0.2 | ALPHA-MANNOSIDASE 2C1 |
| Bpl_scaf_563-0.6 | NECTIN-RELATED |
| Bpl_scaf_563-1.13 | CEREBELLIN-RELATED |
| Bpl_scaf_563-1.16 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Bpl_scaf_563-1.2 | |
| Bpl_scaf_563-1.35 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_563-1.58 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_563-1.59 | OSJNBA0013A04.12 PROTEIN |
| Bpl_scaf_563-1.6 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_563-1.60 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_563-1.61 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| Bpl_scaf_56300-0.2 | |
| Bpl_scaf_56300-1.11 | INNEXIN |
| Bpl_scaf_56300-1.18 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_56300-1.21 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Bpl_scaf_56300-1.22 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_56300-1.8 | INNEXIN |
| Bpl_scaf_56300-2.7 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
| Bpl_scaf_56300-2.8 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
| Bpl_scaf_56300-3.15 | PAR-6-RELATED |
| Bpl_scaf_56300-3.16 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_56300-3.19 | |
| Bpl_scaf_56300-3.21 | |
| Bpl_scaf_56300-3.3 | |
| Bpl_scaf_56305-0.0 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_56310-0.1 | |
| Bpl_scaf_56310-0.2 | |
| Bpl_scaf_56310-1.11 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56310-1.2 | |
| Bpl_scaf_56310-1.8 | ZINC FINGER PROTEIN |
| Bpl_scaf_56310-2.7 | ZINC FINGER PROTEIN |
| Bpl_scaf_56310-3.11 | SYNPHILIN-1 |
| Bpl_scaf_56310-3.12 | VESICULAR MANNOSE-BINDING LECTIN |
| Bpl_scaf_56338-1.13 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| Bpl_scaf_56338-2.12 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_56338-2.14 | - |
| Bpl_scaf_56339-0.7 | - |
| Bpl_scaf_56339-0.8 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| Bpl_scaf_56339-0.9 | ENOYL-COA HYDRATASE-RELATED |
| Bpl_scaf_56339-1.14 | NINJURIN-RELATED |
| Bpl_scaf_56339-1.15 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| Bpl_scaf_56339-1.17 | COILED-COIL DOMAIN-CONTAINING PROTEIN 51 |
| Bpl_scaf_56339-11.17 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 |
| Bpl_scaf_56339-11.18 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
