Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56344-2.13 | |
| Bpl_scaf_56344-2.14 | |
| Bpl_scaf_56344-4.12 | DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED |
| Bpl_scaf_56344-4.23 | NETRIN/LAMININ-RELATED |
| Bpl_scaf_56344-4.25 | CYTOKINE RECEPTOR |
| Bpl_scaf_56344-4.26 | RRP15-LIKE PROTEIN |
| Bpl_scaf_56344-4.28 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_56344-4.29 | CENTROSOMAL PROTEIN KIZUNA |
| Bpl_scaf_56344-4.6 | |
| Bpl_scaf_56345-0.4 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_56353-0.0 | |
| Bpl_scaf_56353-0.1 | |
| Bpl_scaf_56353-0.2 | |
| Bpl_scaf_56353-3.26 | |
| Bpl_scaf_56353-3.27 | OBG GTPASE FAMILY |
| Bpl_scaf_56353-3.28 | PROTEIN SIDEKICK |
| Bpl_scaf_56353-3.29 | PROTEIN SIDEKICK |
| Bpl_scaf_56353-3.30 | BASIGIN RELATED |
| Bpl_scaf_56353-3.31 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_56353-3.32 | SPARC OSTEONECTIN |
| Bpl_scaf_56354-0.2 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| Bpl_scaf_56354-1.6 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_56354-10.2 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Bpl_scaf_56354-11.3 | SERINE/THREONINE-PROTEIN KINASE 17 |
| Bpl_scaf_56354-11.6 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Bpl_scaf_56354-11.8 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_56354-2.8 | ZINC FINGER PROTEIN |
| Bpl_scaf_56354-3.15 | THAP DOMAIN PROTEIN |
| Bpl_scaf_56354-3.5 | TRANSAMINASE |
| Bpl_scaf_56354-3.6 | |
| Bpl_scaf_56354-4.0 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56354-5.3 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_56354-7.8 | UNCHARACTERIZED |
| Bpl_scaf_56354-8.10 | U6 SNRNA-ASSOCIATED PROTEIN |
| Bpl_scaf_56354-8.14 | 40S RIBOSOMAL PROTEIN S26 |
| Bpl_scaf_56354-8.9 | OBG GTPASE FAMILY |
| Bpl_scaf_56354-9.3 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Bpl_scaf_5636-0.2 | |
| Bpl_scaf_56361-0.2 | |
| Bpl_scaf_56361-0.6 | |
| Bpl_scaf_56362-0.8 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_56364-2.10 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_56364-3.0 | EPIMERASE-RELATED |
| Bpl_scaf_56364-3.1 | |
| Bpl_scaf_56364-3.10 | BETA-1,4-GALACTOSYLTRANSFERASE |
| Bpl_scaf_56365-0.0 | |
| Bpl_scaf_56366-0.2 | |
| Bpl_scaf_56367-0.2 | NECTIN-RELATED |
| Bpl_scaf_56369-0.0 | |
| Bpl_scaf_56369-0.1 | ATP-DEPENDENT DNA HELICASE |
