Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_56567-0.0 | |
| Bpl_scaf_56573-0.1 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_56573-0.4 | |
| Bpl_scaf_56583-0.3 | |
| Bpl_scaf_56590-0.5 | |
| Bpl_scaf_56614-0.1 | |
| Bpl_scaf_56625-0.12 | STRIATIN |
| Bpl_scaf_56625-0.16 | BLR2807 PROTEIN |
| Bpl_scaf_56632-0.3 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_56638-0.2 | |
| Bpl_scaf_56638-0.4 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_56638-0.7 | CALPAIN |
| Bpl_scaf_56646-0.3 | |
| Bpl_scaf_56649-0.5 | |
| Bpl_scaf_56657-0.12 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_56657-0.5 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_56657-0.6 | |
| Bpl_scaf_56657-0.7 | ZGC:195170 |
| Bpl_scaf_56663-0.4 | E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN |
| Bpl_scaf_56663-0.5 | DIHYDROFOLATE REDUCTASE |
| Bpl_scaf_56673-0.9 | |
| Bpl_scaf_56674-0.32 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_56674-0.33 | GLYCOSYL HYDROLASE-RELATED |
| Bpl_scaf_56674-0.34 | GLYCOSYL HYDROLASE-RELATED |
| Bpl_scaf_56674-1.17 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Bpl_scaf_56674-1.7 | CELL CYCLE CHECKPOINT PROTEIN RAD1 |
| Bpl_scaf_56674-1.8 | SEC14 RELATED PROTEIN |
| Bpl_scaf_56674-2.15 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| Bpl_scaf_56674-2.16 | UNCHARACTERIZED |
| Bpl_scaf_56674-2.5 | |
| Bpl_scaf_56674-2.6 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Bpl_scaf_56674-3.3 | FUKUTIN RELATED PROTEIN |
| Bpl_scaf_56674-3.7 | INVERTED FORMIN-2 |
| Bpl_scaf_56674-4.1 | INVERTED FORMIN-2 |
| Bpl_scaf_56674-4.3 | INVERTED FORMIN-2 |
| Bpl_scaf_56674-5.1 | UNCHARACTERIZED |
| Bpl_scaf_56674-5.10 | UNCHARACTERIZED |
| Bpl_scaf_56674-5.11 | PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED |
| Bpl_scaf_56674-5.4 | UNCHARACTERIZED |
| Bpl_scaf_56674-6.10 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_56674-6.11 | ALPHA-TECTORIN-RELATED |
| Bpl_scaf_56681-0.12 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_56681-0.15 | UNCHARACTERIZED |
| Bpl_scaf_56681-0.2 | B-CELL LYMPHOMA/LEUKEMIA 11 |
| Bpl_scaf_56681-0.4 | |
| Bpl_scaf_56681-0.41 | SIALATE O-ACETYLESTERASE |
| Bpl_scaf_56693-0.10 | |
| Bpl_scaf_5670-0.3 | PRESEQUENCE PROTEASE |
| Bpl_scaf_5670-1.2 | MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER |
| Bpl_scaf_5670-2.6 | DIHYDRODIPICOLINATE SYNTHASE |
