About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002530-T1ZINC FINGER PROTEIN
LLU|FUN_002531-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
LLU|FUN_002532-T1
LLU|FUN_002533-T1
LLU|FUN_002534-T1PF6
LLU|FUN_002535-T1GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
LLU|FUN_002536-T1
LLU|FUN_002537-T1
LLU|FUN_002538-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
LLU|FUN_002539-T1L-CYSTEINE DESULFHYDRASE
LLU|FUN_002540-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_002541-T1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3
LLU|FUN_002542-T1NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1
LLU|FUN_002543-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
LLU|FUN_002544-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
LLU|FUN_002545-T1
LLU|FUN_002546-T1
LLU|FUN_002547-T1
LLU|FUN_002548-T1
LLU|FUN_002549-T1
LLU|FUN_002550-T1POU DOMAIN
LLU|FUN_002551-T1
LLU|FUN_002552-T1
LLU|FUN_002553-T1
LLU|FUN_002554-T1
LLU|FUN_002555-T1
LLU|FUN_002556-T1CS DOMAIN-CONTAINING PROTEIN
LLU|FUN_002557-T1
LLU|FUN_002558-T1
LLU|FUN_002559-T1
LLU|FUN_002560-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_002561-T1
LLU|FUN_002562-T1
LLU|FUN_002563-T1U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11
LLU|FUN_002564-T1
LLU|FUN_002565-T1
LLU|FUN_002566-T1
LLU|FUN_002567-T1RIBOSOMAL PROTEIN S9
LLU|FUN_002568-T1T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED
LLU|FUN_002569-T1
LLU|FUN_002570-T1
LLU|FUN_002571-T1
LLU|FUN_002572-T1
LLU|FUN_002573-T1CLATHRIN ASSEMBLY PROTEIN
LLU|FUN_002574-T1
LLU|FUN_002575-T1
LLU|FUN_002576-T1
LLU|FUN_002577-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
LLU|FUN_002578-T1
LLU|FUN_002579-T1
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