Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_002228-T1 | DIPEPTIDYL PEPTIDASE III-RELATED |
LLU|FUN_002229-T1 | ACYLPHOSPHATASE |
LLU|FUN_002230-T1 | IONOTROPIC RECEPTOR 20A-RELATED |
LLU|FUN_002231-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_002232-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_002233-T1 | - |
LLU|FUN_002234-T1 | |
LLU|FUN_002235-T1 | CALCIUM BINDING PROTEIN |
LLU|FUN_002236-T1 | CALCIUM BINDING PROTEIN |
LLU|FUN_002237-T1 | CALCIUM BINDING PROTEIN |
LLU|FUN_002238-T1 | PROTEIN STPG4 |
LLU|FUN_002239-T1 | |
LLU|FUN_002240-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR |
LLU|FUN_002241-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_002242-T1 | |
LLU|FUN_002243-T1 | |
LLU|FUN_002244-T1 | |
LLU|FUN_002245-T1 | |
LLU|FUN_002246-T1 | RIBOSOMAL PROTEIN S15P/S13E |
LLU|FUN_002247-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
LLU|FUN_002248-T1 | ALDEHYDE DEHYDROGENASE |
LLU|FUN_002249-T1 | MYB PROTEIN-RELATED |
LLU|FUN_002250-T1 | |
LLU|FUN_002251-T1 | FARNESYL-PYROPHOSPHATE SYNTHETASE |
LLU|FUN_002252-T1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
LLU|FUN_002253-T1 | |
LLU|FUN_002254-T1 | |
LLU|FUN_002255-T1 | |
LLU|FUN_002256-T1 | |
LLU|FUN_002257-T1 | T-BOX PROTEIN-RELATED |
LLU|FUN_002258-T1 | T-BOX PROTEIN-RELATED |
LLU|FUN_002259-T1 | |
LLU|FUN_002260-T1 | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1 |
LLU|FUN_002261-T1 | |
LLU|FUN_002262-T1 | CHROMOSOME 12 ORF 43 HOMOLOG |
LLU|FUN_002263-T1 | TRANSMEMBRANE PROTEIN 248-LIKE |
LLU|FUN_002264-T1 | MAX DIMERIZATION, MAD |
LLU|FUN_002265-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
LLU|FUN_002266-T1 | PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2 |
LLU|FUN_002267-T1 | |
LLU|FUN_002268-T1 | |
LLU|FUN_002269-T1 | MUCIN-1-RELATED |
LLU|FUN_002270-T1 | |
LLU|FUN_002271-T1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
LLU|FUN_002272-T1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
LLU|FUN_002273-T1 | |
LLU|FUN_002274-T1 | |
LLU|FUN_002275-T1 | |
LLU|FUN_002276-T1 | P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN |
LLU|FUN_002277-T1 |