About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002228-T1DIPEPTIDYL PEPTIDASE III-RELATED
LLU|FUN_002229-T1ACYLPHOSPHATASE
LLU|FUN_002230-T1IONOTROPIC RECEPTOR 20A-RELATED
LLU|FUN_002231-T1WD40 REPEAT PROTEIN
LLU|FUN_002232-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
LLU|FUN_002233-T1-
LLU|FUN_002234-T1
LLU|FUN_002235-T1CALCIUM BINDING PROTEIN
LLU|FUN_002236-T1CALCIUM BINDING PROTEIN
LLU|FUN_002237-T1CALCIUM BINDING PROTEIN
LLU|FUN_002238-T1PROTEIN STPG4
LLU|FUN_002239-T1
LLU|FUN_002240-T1TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
LLU|FUN_002241-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_002242-T1
LLU|FUN_002243-T1
LLU|FUN_002244-T1
LLU|FUN_002245-T1
LLU|FUN_002246-T1RIBOSOMAL PROTEIN S15P/S13E
LLU|FUN_002247-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
LLU|FUN_002248-T1ALDEHYDE DEHYDROGENASE
LLU|FUN_002249-T1MYB PROTEIN-RELATED
LLU|FUN_002250-T1
LLU|FUN_002251-T1FARNESYL-PYROPHOSPHATE SYNTHETASE
LLU|FUN_002252-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
LLU|FUN_002253-T1
LLU|FUN_002254-T1
LLU|FUN_002255-T1
LLU|FUN_002256-T1
LLU|FUN_002257-T1T-BOX PROTEIN-RELATED
LLU|FUN_002258-T1T-BOX PROTEIN-RELATED
LLU|FUN_002259-T1
LLU|FUN_002260-T1ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1
LLU|FUN_002261-T1
LLU|FUN_002262-T1CHROMOSOME 12 ORF 43 HOMOLOG
LLU|FUN_002263-T1TRANSMEMBRANE PROTEIN 248-LIKE
LLU|FUN_002264-T1MAX DIMERIZATION, MAD
LLU|FUN_002265-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
LLU|FUN_002266-T1PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2
LLU|FUN_002267-T1
LLU|FUN_002268-T1
LLU|FUN_002269-T1MUCIN-1-RELATED
LLU|FUN_002270-T1
LLU|FUN_002271-T1EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
LLU|FUN_002272-T1EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
LLU|FUN_002273-T1
LLU|FUN_002274-T1
LLU|FUN_002275-T1
LLU|FUN_002276-T1P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN
LLU|FUN_002277-T1
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