About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002178-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
LLU|FUN_002179-T1TRNA PSEUDOURIDINE SYNTHASE D
LLU|FUN_002180-T1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_002181-T1
LLU|FUN_002182-T1
LLU|FUN_002183-T1SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
LLU|FUN_002184-T1RAB GDP-DISSOCIATION INHIBITOR
LLU|FUN_002185-T1NAD DEPENDENT EPIMERASE/DEHYDRATASE
LLU|FUN_002186-T1
LLU|FUN_002187-T1NAD DEPENDENT EPIMERASE/DEHYDRATASE
LLU|FUN_002188-T1
LLU|FUN_002189-T1
LLU|FUN_002190-T1
LLU|FUN_002191-T1
LLU|FUN_002192-T1CRUMBS FAMILY MEMBER
LLU|FUN_002193-T1
LLU|FUN_002194-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_002195-T1BARRIER TO AUTOINTEGRATION FACTOR 2
LLU|FUN_002196-T1
LLU|FUN_002197-T1
LLU|FUN_002198-T1
LLU|FUN_002199-T1CHITINASE
LLU|FUN_002200-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_002201-T1SORTING NEXIN-8
LLU|FUN_002202-T1INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6
LLU|FUN_002203-T1SCP160
LLU|FUN_002204-T1
LLU|FUN_002205-T1
LLU|FUN_002206-T1
LLU|FUN_002207-T1
LLU|FUN_002208-T1
LLU|FUN_002209-T1
LLU|FUN_002210-T1
LLU|FUN_002211-T1
LLU|FUN_002212-T1SI:DKEY-57N24.6
LLU|FUN_002213-T1
LLU|FUN_002214-T1
LLU|FUN_002215-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_002216-T1UNCHARACTERIZED
LLU|FUN_002217-T1MOLTING PROTEIN MLT-4
LLU|FUN_002218-T1
LLU|FUN_002219-T1
LLU|FUN_002220-T1NADPH NITROREDUCTASE
LLU|FUN_002221-T1
LLU|FUN_002222-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_002223-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_002224-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_002225-T1ADP RIBOSYLATION FACTOR-RELATED
LLU|FUN_002226-T1DRAB11-RELATED
LLU|FUN_002227-T1UNCHARACTERIZED
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