About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002379-T1
LLU|FUN_002380-T1CREB/ATF BZIP TRANSCRIPTION FACTOR
LLU|FUN_002381-T1
LLU|FUN_002382-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
LLU|FUN_002383-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
LLU|FUN_002384-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
LLU|FUN_002385-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
LLU|FUN_002386-T1
LLU|FUN_002387-T1SIMILAR TO KIAA0825 PROTEIN
LLU|FUN_002388-T1EXPRESSED PROTEIN
LLU|FUN_002389-T1
LLU|FUN_002390-T1ARGININE OR CREATINE KINASE
LLU|FUN_002391-T1SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
LLU|FUN_002392-T1SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
LLU|FUN_002393-T1
LLU|FUN_002394-T1
LLU|FUN_002395-T1TYROSINE-PROTEIN KINASE
LLU|FUN_002396-T1LUPUS LA PROTEIN-RELATED
LLU|FUN_002397-T1FRATAXIN
LLU|FUN_002398-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
LLU|FUN_002399-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
LLU|FUN_002400-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
LLU|FUN_002401-T1F20B24.22
LLU|FUN_002402-T1ELECTRON TRANSFER FLAVOPROTEIN ALPHA
LLU|FUN_002403-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
LLU|FUN_002404-T1
LLU|FUN_002405-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
LLU|FUN_002406-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
LLU|FUN_002407-T1INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN
LLU|FUN_002408-T1
LLU|FUN_002409-T1
LLU|FUN_002410-T1
LLU|FUN_002411-T1
LLU|FUN_002412-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
LLU|FUN_002413-T1
LLU|FUN_002414-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_002415-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_002416-T1
LLU|FUN_002417-T1TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED
LLU|FUN_002418-T1VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1
LLU|FUN_002419-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
LLU|FUN_002420-T1
LLU|FUN_002421-T1
LLU|FUN_002422-T1SH3 DOMAIN-BINDING PROTEIN 5
LLU|FUN_002423-T1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
LLU|FUN_002424-T1TRANSMEMBRANE PROTEIN 106B
LLU|FUN_002425-T1LANC-LIKE PROTEIN
LLU|FUN_002426-T1CYTOCHROME P450 FAMILY 7
LLU|FUN_002427-T1TERPENE CYCLASE/MUTASE FAMILY MEMBER
LLU|FUN_002428-T1TERPENE CYCLASE/MUTASE FAMILY MEMBER
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