Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_002379-T1 | |
LLU|FUN_002380-T1 | CREB/ATF BZIP TRANSCRIPTION FACTOR |
LLU|FUN_002381-T1 | |
LLU|FUN_002382-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
LLU|FUN_002383-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
LLU|FUN_002384-T1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
LLU|FUN_002385-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
LLU|FUN_002386-T1 | |
LLU|FUN_002387-T1 | SIMILAR TO KIAA0825 PROTEIN |
LLU|FUN_002388-T1 | EXPRESSED PROTEIN |
LLU|FUN_002389-T1 | |
LLU|FUN_002390-T1 | ARGININE OR CREATINE KINASE |
LLU|FUN_002391-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_002392-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_002393-T1 | |
LLU|FUN_002394-T1 | |
LLU|FUN_002395-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_002396-T1 | LUPUS LA PROTEIN-RELATED |
LLU|FUN_002397-T1 | FRATAXIN |
LLU|FUN_002398-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
LLU|FUN_002399-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002400-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
LLU|FUN_002401-T1 | F20B24.22 |
LLU|FUN_002402-T1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
LLU|FUN_002403-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_002404-T1 | |
LLU|FUN_002405-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_002406-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_002407-T1 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN |
LLU|FUN_002408-T1 | |
LLU|FUN_002409-T1 | |
LLU|FUN_002410-T1 | |
LLU|FUN_002411-T1 | |
LLU|FUN_002412-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
LLU|FUN_002413-T1 | |
LLU|FUN_002414-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_002415-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
LLU|FUN_002416-T1 | |
LLU|FUN_002417-T1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
LLU|FUN_002418-T1 | VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1 |
LLU|FUN_002419-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA |
LLU|FUN_002420-T1 | |
LLU|FUN_002421-T1 | |
LLU|FUN_002422-T1 | SH3 DOMAIN-BINDING PROTEIN 5 |
LLU|FUN_002423-T1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
LLU|FUN_002424-T1 | TRANSMEMBRANE PROTEIN 106B |
LLU|FUN_002425-T1 | LANC-LIKE PROTEIN |
LLU|FUN_002426-T1 | CYTOCHROME P450 FAMILY 7 |
LLU|FUN_002427-T1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
LLU|FUN_002428-T1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |