Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_002580-T1 | |
LLU|FUN_002581-T1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
LLU|FUN_002582-T1 | |
LLU|FUN_002583-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_002584-T1 | CATION-TRANSPORTING ATPASE-RELATED |
LLU|FUN_002585-T1 | |
LLU|FUN_002586-T1 | |
LLU|FUN_002587-T1 | |
LLU|FUN_002588-T1 | |
LLU|FUN_002589-T1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
LLU|FUN_002590-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
LLU|FUN_002591-T1 | NUCLEASE-RELATED |
LLU|FUN_002592-T1 | NGG1 INTERACTING FACTOR 3 |
LLU|FUN_002593-T1 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
LLU|FUN_002594-T1 | RAB GTPASE-BINDING EFFECTOR PROTEIN |
LLU|FUN_002595-T1 | |
LLU|FUN_002596-T1 | |
LLU|FUN_002597-T1 | STANNIOCALCIN |
LLU|FUN_002598-T1 | OS10G0105400 PROTEIN |
LLU|FUN_002600-T1 | - |
LLU|FUN_002601-T1 | |
LLU|FUN_002602-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_002604-T1 | ELL-ASSOCIATED FACTOR EAF |
LLU|FUN_002605-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
LLU|FUN_002606-T1 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
LLU|FUN_002607-T1 | |
LLU|FUN_002608-T1 | |
LLU|FUN_002609-T1 | |
LLU|FUN_002610-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
LLU|FUN_002611-T1 | CENTROMERE PROTEIN E |
LLU|FUN_002612-T1 | CENTROMERE PROTEIN E |
LLU|FUN_002613-T1 | BETA-GALACTOSIDASE RELATED |
LLU|FUN_002614-T1 | SENTRIN/SUMO-SPECIFIC PROTEASE |
LLU|FUN_002615-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_002616-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_002617-T1 | |
LLU|FUN_002618-T1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
LLU|FUN_002619-T1 | SPHINGOMYELIN PHOSPHODIESTERASE |
LLU|FUN_002620-T1 | FG-GAP REPEAT-CONTAINING PROTEIN |
LLU|FUN_002621-T1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
LLU|FUN_002622-T1 | RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 |
LLU|FUN_002623-T1 | NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN |
LLU|FUN_002624-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_002625-T1 | UNCHARACTERIZED |
LLU|FUN_002626-T1 | DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN |
LLU|FUN_002627-T1 | |
LLU|FUN_002628-T1 | |
LLU|FUN_002629-T1 | YIPPEE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_002630-T1 | |
LLU|FUN_002631-T1 |