About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_002580-T1
LLU|FUN_002581-T1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
LLU|FUN_002582-T1
LLU|FUN_002583-T1WD40 REPEAT PROTEIN
LLU|FUN_002584-T1CATION-TRANSPORTING ATPASE-RELATED
LLU|FUN_002585-T1
LLU|FUN_002586-T1
LLU|FUN_002587-T1
LLU|FUN_002588-T1
LLU|FUN_002589-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA
LLU|FUN_002590-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
LLU|FUN_002591-T1NUCLEASE-RELATED
LLU|FUN_002592-T1NGG1 INTERACTING FACTOR 3
LLU|FUN_002593-T1CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
LLU|FUN_002594-T1RAB GTPASE-BINDING EFFECTOR PROTEIN
LLU|FUN_002595-T1
LLU|FUN_002596-T1
LLU|FUN_002597-T1STANNIOCALCIN
LLU|FUN_002598-T1OS10G0105400 PROTEIN
LLU|FUN_002600-T1-
LLU|FUN_002601-T1
LLU|FUN_002602-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_002604-T1ELL-ASSOCIATED FACTOR EAF
LLU|FUN_002605-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
LLU|FUN_002606-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
LLU|FUN_002607-T1
LLU|FUN_002608-T1
LLU|FUN_002609-T1
LLU|FUN_002610-T1NACHT, LRR AND CARD DOMAINS-CONTAINING
LLU|FUN_002611-T1CENTROMERE PROTEIN E
LLU|FUN_002612-T1CENTROMERE PROTEIN E
LLU|FUN_002613-T1BETA-GALACTOSIDASE RELATED
LLU|FUN_002614-T1SENTRIN/SUMO-SPECIFIC PROTEASE
LLU|FUN_002615-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_002616-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_002617-T1
LLU|FUN_002618-T1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
LLU|FUN_002619-T1SPHINGOMYELIN PHOSPHODIESTERASE
LLU|FUN_002620-T1FG-GAP REPEAT-CONTAINING PROTEIN
LLU|FUN_002621-T1DNA REPAIR/RNA PROCESSING CPSF FAMILY
LLU|FUN_002622-T1RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1
LLU|FUN_002623-T1NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN
LLU|FUN_002624-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
LLU|FUN_002625-T1UNCHARACTERIZED
LLU|FUN_002626-T1DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN
LLU|FUN_002627-T1
LLU|FUN_002628-T1
LLU|FUN_002629-T1YIPPEE DOMAIN-CONTAINING PROTEIN
LLU|FUN_002630-T1
LLU|FUN_002631-T1
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