Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54796-1.13 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54796-1.25 | UNCHARACTERIZED |
| Bpl_scaf_54796-1.26 | |
| Bpl_scaf_54796-2.1 | |
| Bpl_scaf_54796-2.3 | |
| Bpl_scaf_54796-3.31 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_54796-3.32 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_54796-3.34 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_54796-4.7 | WD40 REPEAT DOMAIN 95 |
| Bpl_scaf_54796-5.5 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Bpl_scaf_54796-6.4 | ANNEXIN |
| Bpl_scaf_54796-7.10 | LD09343P |
| Bpl_scaf_54796-7.14 | CHAPERONIN |
| Bpl_scaf_54796-7.9 | |
| Bpl_scaf_54805-0.6 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_54816-0.1 | EARLY ENDOSOME ANTIGEN 1 |
| Bpl_scaf_54816-0.3 | |
| Bpl_scaf_54816-0.5 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 |
| Bpl_scaf_54816-1.13 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| Bpl_scaf_54816-1.15 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| Bpl_scaf_54829-0.2 | |
| Bpl_scaf_54829-0.9 | PUTATIVE-RELATED |
| Bpl_scaf_54834-0.4 | CCR4-NOT TRANSCRIPTION COMPLEX |
| Bpl_scaf_54834-1.1 | |
| Bpl_scaf_54834-1.10 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_54834-1.3 | AGAP008170-PA |
| Bpl_scaf_54834-1.4 | |
| Bpl_scaf_54834-1.5 | |
| Bpl_scaf_54841-0.0 | |
| Bpl_scaf_54841-0.13 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Bpl_scaf_54841-0.14 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| Bpl_scaf_54841-0.5 | ZGC:195170 |
| Bpl_scaf_54841-1.2 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_54841-1.4 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54851-0.4 | |
| Bpl_scaf_54851-1.13 | SORTING NEXIN |
| Bpl_scaf_54851-1.14 | A-KINASE ANCHOR PROTEINS |
| Bpl_scaf_54851-1.15 | SORTING NEXIN |
| Bpl_scaf_54856-0.5 | |
| Bpl_scaf_54861-0.11 | |
| Bpl_scaf_54861-0.12 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_54861-0.6 | |
| Bpl_scaf_54861-1.0 | EG:80H7.2 PROTEIN |
| Bpl_scaf_54861-1.18 | |
| Bpl_scaf_54861-1.20 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_54861-1.21 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_54861-1.3 | |
| Bpl_scaf_54861-1.5 | |
| Bpl_scaf_54862-0.11 | CEREBELLIN-RELATED |
| Bpl_scaf_54862-0.6 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN |
