About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_54411-5.203-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
Bpl_scaf_54411-5.22MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_54411-5.23
Bpl_scaf_54411-6.173-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
Bpl_scaf_54411-6.18PROTEIN IWS1 HOMOLOG
Bpl_scaf_54411-6.19GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Bpl_scaf_54411-6.20PEPTIDASE S8
Bpl_scaf_54411-6.21UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
Bpl_scaf_54412-0.3
Bpl_scaf_54412-1.17CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_54412-1.18
Bpl_scaf_54412-10.1N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1
Bpl_scaf_54412-11.13
Bpl_scaf_54412-11.14
Bpl_scaf_54412-11.19ASPARTYL PROTEASE-RELATED
Bpl_scaf_54412-11.20IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_54412-3.10
Bpl_scaf_54412-3.17
Bpl_scaf_54412-4.0
Bpl_scaf_54412-4.13STEROL DESATURASE
Bpl_scaf_54412-4.4PR DOMAIN ZINC FINGER PROTEIN
Bpl_scaf_54412-4.5DUAL SPECIFICITY PROTEIN KINASE
Bpl_scaf_54412-5.14
Bpl_scaf_54412-5.8DEOXYRIBONUCLEASE TATDN2-RELATED
Bpl_scaf_54412-6.37
Bpl_scaf_54412-6.38ZINC FINGER PROTEIN 142
Bpl_scaf_54412-6.6
Bpl_scaf_54412-7.12
Bpl_scaf_54412-7.13-
Bpl_scaf_54412-7.14TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Bpl_scaf_54412-7.27
Bpl_scaf_54412-7.3
Bpl_scaf_54412-7.30REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_54412-8.1240S RIBOSOMAL PROTEIN S19
Bpl_scaf_54412-8.17METALLOPEPTIDASE M28 FAMILY MEMBER
Bpl_scaf_54412-8.5
Bpl_scaf_54412-8.7SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_54412-9.5G-PROTEIN COUPLED RECEPTOR 89-RELATED
Bpl_scaf_54412-9.6UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Bpl_scaf_54419-0.5TRANSCRIPTION ELONGATION REGULATOR 1
Bpl_scaf_54419-0.7OSJNBA0013A04.12 PROTEIN
Bpl_scaf_54420-0.0
Bpl_scaf_54423-0.0APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_54423-0.1
Bpl_scaf_54423-0.8CHAPERONIN
Bpl_scaf_54423-1.1
Bpl_scaf_54423-1.3LAMIN DM0-RELATED
Bpl_scaf_54423-1.4RNA BINDING PROTEIN
Bpl_scaf_54423-2.11
Bpl_scaf_54423-2.34CONTACTIN 5
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