Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54504-4.17 | |
| Bpl_scaf_54504-4.21 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_54512-0.0 | PROTEIN RER1 |
| Bpl_scaf_54513-0.10 | |
| Bpl_scaf_54513-0.16 | |
| Bpl_scaf_54513-0.2 | |
| Bpl_scaf_54513-0.4 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_54513-1.23 | |
| Bpl_scaf_54513-1.24 | |
| Bpl_scaf_54513-1.25 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_54513-2.18 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_54513-2.19 | WNT RELATED |
| Bpl_scaf_54513-2.20 | |
| Bpl_scaf_54513-2.7 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_54513-4.18 | |
| Bpl_scaf_54513-4.44 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_54513-4.45 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| Bpl_scaf_54513-4.47 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_54513-4.48 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_54528-0.8 | TETRASPANIN |
| Bpl_scaf_54528-0.9 | |
| Bpl_scaf_5453-0.0 | SI:DKEY-31G6.6 |
| Bpl_scaf_54535-0.3 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_54536-0.3 | INTEGRIN ALPHA |
| Bpl_scaf_54536-1.12 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_54536-1.13 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| Bpl_scaf_54536-1.14 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
| Bpl_scaf_54536-2.1 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
| Bpl_scaf_54536-4.1 | |
| Bpl_scaf_54536-4.11 | |
| Bpl_scaf_54536-4.21 | |
| Bpl_scaf_54536-4.22 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_54536-4.44 | |
| Bpl_scaf_54561-0.12 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_54561-0.13 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_54561-0.14 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_54561-0.9 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| Bpl_scaf_54569-0.10 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_54577-0.3 | |
| Bpl_scaf_54589-0.4 | CHITINASE |
| Bpl_scaf_54596-0.16 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_54596-0.17 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_546-0.5 | ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_54606-0.12 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Bpl_scaf_5461-0.0 | |
| Bpl_scaf_5462-1.0 | |
| Bpl_scaf_5462-1.20 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Bpl_scaf_5462-1.22 | |
| Bpl_scaf_5462-1.23 | |
| Bpl_scaf_5462-1.24 |
