Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54193-0.18 | |
| Bpl_scaf_54193-0.27 | ADULT RETINA PROTEIN |
| Bpl_scaf_54193-0.28 | |
| Bpl_scaf_54203-0.13 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54203-0.15 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54203-0.16 | BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN |
| Bpl_scaf_54203-0.30 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| Bpl_scaf_54203-0.9 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| Bpl_scaf_54213-0.10 | MYOSIN LIGHT CHAIN 1, 3 |
| Bpl_scaf_54213-0.49 | CENTROMERE/KINETOCHORE PROTEIN ZW10 |
| Bpl_scaf_54213-0.5 | |
| Bpl_scaf_54213-0.7 | HOMEOBOX PROTEIN SIX |
| Bpl_scaf_54214-0.4 | SOLUTE CARRIER FAMILY 17 |
| Bpl_scaf_54214-1.3 | CGI-12 PROTEIN-RELATED |
| Bpl_scaf_54214-1.6 | MITOCHONDRIAL RIBOSOMAL PROTEIN L37 |
| Bpl_scaf_54214-1.7 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_54214-2.0 | THAP DOMAIN-CONTAINING |
| Bpl_scaf_54214-2.10 | PROTEIN SEL-1 HOMOLOG 3 |
| Bpl_scaf_54214-2.7 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54214-3.4 | |
| Bpl_scaf_54214-3.5 | NEPHRIN |
| Bpl_scaf_54214-3.8 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
| Bpl_scaf_54214-4.10 | ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 |
| Bpl_scaf_54214-4.14 | BUD13 HOMOLOG |
| Bpl_scaf_54214-4.9 | NF-KAPPA-B INHIBITOR ALPHA |
| Bpl_scaf_54214-5.6 | - |
| Bpl_scaf_54214-5.7 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| Bpl_scaf_54214-6.3 | PROTEIN DISULFIDE-ISOMERASE TMX3 |
| Bpl_scaf_54214-7.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_54214-7.3 | PROTEIN DISULFIDE-ISOMERASE TMX3 |
| Bpl_scaf_54224-0.4 | TRANSPOSON |
| Bpl_scaf_5423-0.26 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_5423-0.27 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_5423-0.28 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5423-0.29 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_5423-0.30 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_5423-1.0 | |
| Bpl_scaf_54233-0.11 | TRANSMEMBRANE PROTEIN 128 |
| Bpl_scaf_54233-0.18 | E3 UBIQUITIN-PROTEIN LIGASE MARCH5 |
| Bpl_scaf_54233-0.9 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| Bpl_scaf_54251-0.2 | |
| Bpl_scaf_54251-1.1 | |
| Bpl_scaf_54251-1.2 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_54251-1.21 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_54251-1.5 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_54251-1.9 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
| Bpl_scaf_54256-1.5 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| Bpl_scaf_54256-1.6 | |
| Bpl_scaf_54265-0.6 | GEMININ |
| Bpl_scaf_54265-0.7 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
