Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_5438-0.11 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_5438-0.12 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_5438-0.8 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_5438-1.13 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_5438-1.16 | |
| Bpl_scaf_5438-1.17 | |
| Bpl_scaf_5438-1.23 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_5438-1.25 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
| Bpl_scaf_5438-1.36 | |
| Bpl_scaf_5438-1.5 | |
| Bpl_scaf_54381-0.3 | |
| Bpl_scaf_54385-1.16 | ALKYL/ARYL-SULFATASE |
| Bpl_scaf_54385-1.3 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_54385-1.5 | ALKYL/ARYL-SULFATASE |
| Bpl_scaf_54385-2.0 | |
| Bpl_scaf_54385-2.4 | PUTATIVE-RELATED |
| Bpl_scaf_54385-3.0 | |
| Bpl_scaf_54409-0.11 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
| Bpl_scaf_54409-0.8 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54410-0.4 | |
| Bpl_scaf_54410-1.12 | RNA BINDING PROTEIN |
| Bpl_scaf_54410-1.13 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Bpl_scaf_54410-1.31 | RAB FAMILY |
| Bpl_scaf_54410-1.32 | TETRATRICOPEPTIDE REPEAT PROTEIN 38 |
| Bpl_scaf_54410-2.0 | CAS SCAFFOLDING PROTEIN |
| Bpl_scaf_54410-3.16 | - |
| Bpl_scaf_54410-3.20 | MISEXPRESSION SUPPRESSOR OF RAS 6 |
| Bpl_scaf_54410-3.21 | PROTEIN ARGININE N-METHYLTRANSFERASE 5 |
| Bpl_scaf_54410-3.37 | ARYLSULFATASE FAMILY MEMBER |
| Bpl_scaf_54410-3.38 | ARYLSULFATASE FAMILY MEMBER |
| Bpl_scaf_54410-3.39 | AGAP005574-PA |
| Bpl_scaf_54410-3.42 | SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE |
| Bpl_scaf_54410-3.44 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| Bpl_scaf_54411-0.7 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_54411-1.10 | HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 |
| Bpl_scaf_54411-1.5 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| Bpl_scaf_54411-1.8 | |
| Bpl_scaf_54411-2.10 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| Bpl_scaf_54411-2.3 | TETRASPANIN |
| Bpl_scaf_54411-2.8 | RHOMBOID-RELATED PROTEIN |
| Bpl_scaf_54411-2.9 | |
| Bpl_scaf_54411-3.5 | |
| Bpl_scaf_54411-3.9 | |
| Bpl_scaf_54411-4.34 | |
| Bpl_scaf_54411-4.36 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Bpl_scaf_54411-4.39 | ACTIN |
| Bpl_scaf_54411-4.7 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_54411-5.12 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| Bpl_scaf_54411-5.13 | MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED |
| Bpl_scaf_54411-5.18 |
