Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54862-0.7 | JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1 |
| Bpl_scaf_54862-1.0 | |
| Bpl_scaf_54862-1.17 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
| Bpl_scaf_54862-1.18 | INTEGRATOR COMPLEX SUBUNIT 9 |
| Bpl_scaf_54862-1.6 | |
| Bpl_scaf_54862-1.8 | |
| Bpl_scaf_54863-0.6 | |
| Bpl_scaf_54863-1.14 | |
| Bpl_scaf_54863-1.15 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54863-1.17 | PROPERDIN |
| Bpl_scaf_54863-2.11 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_54863-2.12 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_54863-3.11 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_54863-4.16 | |
| Bpl_scaf_54863-4.8 | SUZ DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_54863-4.9 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_54863-5.4 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_54863-6.2 | |
| Bpl_scaf_54863-7.7 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_54863-8.1 | TRANSMEMBRANE PROTEIN 2-RELATED |
| Bpl_scaf_54863-8.16 | BICD FAMILY-LIKE CARGO ADAPTER |
| Bpl_scaf_54863-8.17 | |
| Bpl_scaf_54863-8.26 | |
| Bpl_scaf_54863-8.29 | SIGMA 1-TYPE OPIOID RECEPTOR-RELATED |
| Bpl_scaf_54874-0.4 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_54874-2.0 | SPROUTY |
| Bpl_scaf_54874-2.2 | |
| Bpl_scaf_54874-2.5 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Bpl_scaf_54882-0.7 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
| Bpl_scaf_54882-0.8 | MATERNAL EFFECT PROTEIN STAUFEN |
| Bpl_scaf_54882-1.6 | ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN |
| Bpl_scaf_54882-1.7 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54882-1.9 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
| Bpl_scaf_54882-2.10 | MRNA TURNOVER PROTEIN 4 MRTO4 |
| Bpl_scaf_54882-2.11 | MRNA-CAPPING ENZYME |
| Bpl_scaf_54882-2.12 | 14-3-3 PROTEIN |
| Bpl_scaf_54882-2.22 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| Bpl_scaf_5489-0.4 | |
| Bpl_scaf_5489-1.10 | SERINE/THREONINE PROTEIN KINASE |
| Bpl_scaf_5489-1.7 | NEUROGENIC PROTEIN MASTERMIND |
| Bpl_scaf_5489-1.8 | HOMOGENTISATE 1,2-DIOXYGENASE |
| Bpl_scaf_5489-1.9 | UNCHARACTERIZED |
| Bpl_scaf_5489-2.15 | NADH-UBIQUINONE OXIDOREDUCTASE AGGG SUBUNIT |
| Bpl_scaf_5489-2.7 | VWFA DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_5489-2.8 | SERINE/THREONINE PROTEIN KINASE |
| Bpl_scaf_54895-0.3 | NEPHRIN |
| Bpl_scaf_54896-0.0 | |
| Bpl_scaf_54896-0.2 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_54898-0.4 | |
| Bpl_scaf_54898-2.5 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
