Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54898-2.8 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| Bpl_scaf_54899-0.1 | OBG GTPASE FAMILY |
| Bpl_scaf_54910-0.0 | |
| Bpl_scaf_54912-0.7 | |
| Bpl_scaf_54912-0.8 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_54912-1.7 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_54912-2.32 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_54912-2.34 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_54912-2.35 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| Bpl_scaf_54914-0.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_54915-0.0 | |
| Bpl_scaf_54918-0.0 | |
| Bpl_scaf_54922-0.17 | |
| Bpl_scaf_54922-0.6 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| Bpl_scaf_54922-0.7 | FI01459P |
| Bpl_scaf_54922-0.8 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
| Bpl_scaf_54922-1.16 | INHIBITOR OF GROWTH PROTEIN |
| Bpl_scaf_54922-1.18 | ANAPHASE-PROMOTING COMPLEX 10 |
| Bpl_scaf_54922-1.9 | BETA-ALANINE-ACTIVATING ENZYME |
| Bpl_scaf_54922-2.17 | GRB2-ASSOCIATED-BINDING PROTEIN |
| Bpl_scaf_54922-2.8 | MYOTUBULARIN-RELATED |
| Bpl_scaf_54927-0.3 | CELL CYCLE CONTROL PROTEIN CWF22-RELATED |
| Bpl_scaf_54929-0.2 | PROTEIN NJMU-R1 |
| Bpl_scaf_54930-0.0 | |
| Bpl_scaf_54930-0.2 | |
| Bpl_scaf_54931-1.10 | ZINC FINGER PROTEIN 183 |
| Bpl_scaf_54931-1.11 | |
| Bpl_scaf_54931-1.9 | D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE |
| Bpl_scaf_54931-2.2 | DI-N-ACETYLCHITOBIASE |
| Bpl_scaf_54931-3.11 | SPERMATID WD-REPEAT PROTEIN |
| Bpl_scaf_54931-3.15 | POLYCOMB-LIKE TRANSCRIPTION FACTOR |
| Bpl_scaf_54931-3.3 | |
| Bpl_scaf_5495-0.0 | |
| Bpl_scaf_54967-0.0 | |
| Bpl_scaf_54967-0.17 | FLAVIN MONOAMINE OXIDASE |
| Bpl_scaf_54967-0.21 | ALANYL-TRNA SYNTHETASE |
| Bpl_scaf_54967-0.3 | |
| Bpl_scaf_54968-0.10 | ANNEXIN |
| Bpl_scaf_54968-0.12 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Bpl_scaf_54968-0.8 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54968-1.11 | RNA POLYMERASE III DNA DIRECTED -RELATED |
| Bpl_scaf_54968-1.12 | BLOM7 |
| Bpl_scaf_54968-1.17 | |
| Bpl_scaf_54968-2.16 | HILLARIN |
| Bpl_scaf_54968-2.3 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_54968-2.4 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_54968-2.5 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| Bpl_scaf_54968-2.7 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| Bpl_scaf_54968-3.4 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| Bpl_scaf_54968-4.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
