Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_54968-5.2 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54968-6.17 | |
| Bpl_scaf_54968-6.18 | |
| Bpl_scaf_54968-6.23 | |
| Bpl_scaf_54968-6.24 | |
| Bpl_scaf_54968-6.6 | |
| Bpl_scaf_54970-0.1 | |
| Bpl_scaf_54970-0.9 | OS05G0424000 PROTEIN-RELATED |
| Bpl_scaf_54972-0.12 | 8-OXO-DGTP DIPHOSPHATES NUDT15 |
| Bpl_scaf_54972-0.13 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_54972-0.14 | ZINC FINGER PROTEIN |
| Bpl_scaf_54972-0.5 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
| Bpl_scaf_54972-1.5 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Bpl_scaf_54972-1.6 | SORTING NEXIN-22 AND 24 |
| Bpl_scaf_54972-2.2 | - |
| Bpl_scaf_54972-2.4 | UNCHARACTERIZED |
| Bpl_scaf_54972-2.6 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| Bpl_scaf_54972-3.3 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
| Bpl_scaf_54972-3.5 | |
| Bpl_scaf_54972-4.12 | CCCH ZINC FINGER/TIS11-RELATED |
| Bpl_scaf_54972-4.7 | PHOSPHATIDYLINOSITOL KINASE |
| Bpl_scaf_54972-5.2 | F-BOX/WD REPEAT-CONTAINING PROTEIN 5 |
| Bpl_scaf_54972-6.5 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_54972-6.8 | |
| Bpl_scaf_54972-7.10 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_54972-7.15 | PLASMINOGEN-RELATED |
| Bpl_scaf_54972-7.6 | |
| Bpl_scaf_54972-7.9 | |
| Bpl_scaf_54975-0.0 | |
| Bpl_scaf_54979-0.0 | UNCHARACTERIZED |
| Bpl_scaf_5498-0.0 | |
| Bpl_scaf_5498-0.1 | |
| Bpl_scaf_54980-0.1 | |
| Bpl_scaf_54982-0.3 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| Bpl_scaf_54983-0.0 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_54983-0.1 | |
| Bpl_scaf_54983-1.1 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_54983-2.4 | |
| Bpl_scaf_54983-2.5 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
| Bpl_scaf_54986-0.0 | |
| Bpl_scaf_54989-0.0 | |
| Bpl_scaf_5499-1.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_5499-2.14 | MYOSIN |
| Bpl_scaf_5499-2.22 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_5499-2.24 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_5499-2.8 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_54991-0.1 | |
| Bpl_scaf_54992-0.1 | |
| Bpl_scaf_54993-0.2 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_54993-1.0 | HISTONE H1 |
