About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_016735-T1
LLU|FUN_016736-T1
LLU|FUN_016737-T1
LLU|FUN_016738-T1
LLU|FUN_016739-T1
LLU|FUN_016740-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_016741-T1UNCHARACTERIZED
LLU|FUN_016742-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
LLU|FUN_016743-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
LLU|FUN_016744-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
LLU|FUN_016745-T1
LLU|FUN_016746-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_016747-T1
LLU|FUN_016748-T1
LLU|FUN_016749-T1
LLU|FUN_016750-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
LLU|FUN_016751-T1
LLU|FUN_016752-T1OS10G0105400 PROTEIN
LLU|FUN_016753-T1OS10G0105400 PROTEIN
LLU|FUN_016754-T1
LLU|FUN_016755-T1
LLU|FUN_016756-T1
LLU|FUN_016757-T1PROTEIN CBG24663
LLU|FUN_016758-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
LLU|FUN_016759-T1
LLU|FUN_016760-T1
LLU|FUN_016761-T1
LLU|FUN_016762-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
LLU|FUN_016763-T1
LLU|FUN_016764-T1GLYCINE N-METHYLTRANSFERASE
LLU|FUN_016765-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_016766-T1
LLU|FUN_016767-T1
LLU|FUN_016768-T1
LLU|FUN_016769-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 39
LLU|FUN_016770-T1
LLU|FUN_016775-T1
LLU|FUN_016776-T1
LLU|FUN_016777-T1CRUMBS FAMILY MEMBER
LLU|FUN_016778-T1RAB6-INTERACTING PROTEIN GORAB
LLU|FUN_016779-T1
LLU|FUN_016780-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED
LLU|FUN_016781-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 180
LLU|FUN_016782-T1ARRESTIN DOMAIN CONTAINING PROTEIN
LLU|FUN_016783-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 180
LLU|FUN_016784-T1BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
LLU|FUN_016785-T1PEPTIDASE
LLU|FUN_016786-T1
LLU|FUN_016787-T1
LLU|FUN_016788-T1
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