About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_016435-T1
LLU|FUN_016436-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
LLU|FUN_016437-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
LLU|FUN_016438-T1
LLU|FUN_016439-T1
LLU|FUN_016440-T1
LLU|FUN_016441-T1GM2 GANGLIOSIDE ACTIVATOR PROTEIN
LLU|FUN_016442-T1
LLU|FUN_016443-T1
LLU|FUN_016444-T1SODIUM-BILE ACID COTRANSPORTER
LLU|FUN_016445-T1SODIUM-BILE ACID COTRANSPORTER
LLU|FUN_016446-T1
LLU|FUN_016447-T1
LLU|FUN_016448-T1ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
LLU|FUN_016449-T1
LLU|FUN_016450-T1CADHERIN-23
LLU|FUN_016451-T1
LLU|FUN_016452-T1
LLU|FUN_016453-T1RHO-TYPE GTPASE ACTIVATING PROTEIN
LLU|FUN_016454-T1
LLU|FUN_016455-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_016456-T1
LLU|FUN_016457-T1CALPAIN
LLU|FUN_016458-T1GRB2-ASSOCIATED-BINDING PROTEIN
LLU|FUN_016459-T1
LLU|FUN_016460-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_016461-T1
LLU|FUN_016462-T1
LLU|FUN_016463-T1
LLU|FUN_016464-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_016465-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
LLU|FUN_016466-T1
LLU|FUN_016467-T1
LLU|FUN_016468-T1
LLU|FUN_016469-T1
LLU|FUN_016470-T1
LLU|FUN_016471-T1
LLU|FUN_016472-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
LLU|FUN_016473-T1
LLU|FUN_016474-T1GEM-ASSOCIATED PROTEIN 5
LLU|FUN_016475-T1
LLU|FUN_016476-T1
LLU|FUN_016477-T1
LLU|FUN_016478-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_016479-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
LLU|FUN_016480-T1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
LLU|FUN_016481-T1SNARE PROTEINS
LLU|FUN_016482-T1DNA-DIRECTED RNA POLYMERASE I,II,III
LLU|FUN_016483-T1AARF DOMAIN CONTAINING KINASE 2 (PREDICTED)
LLU|FUN_016484-T1RAB FAMILY
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