Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_016171-T1 | ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN |
LLU|FUN_016172-T1 | |
LLU|FUN_016173-T1 | |
LLU|FUN_016174-T1 | |
LLU|FUN_016175-T1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
LLU|FUN_016176-T1 | |
LLU|FUN_016177-T1 | OS10G0105400 PROTEIN |
LLU|FUN_016178-T1 | |
LLU|FUN_016179-T1 | MUCIN 4-RELATED |
LLU|FUN_016180-T1 | |
LLU|FUN_016181-T1 | MUCIN 4-RELATED |
LLU|FUN_016182-T1 | MUCIN 4-RELATED |
LLU|FUN_016183-T1 | RGD1565685 PROTEIN |
LLU|FUN_016184-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_016185-T1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
LLU|FUN_016186-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_016187-T1 | |
LLU|FUN_016188-T1 | SI:CH211-108C17.2-RELATED-RELATED |
LLU|FUN_016189-T1 | |
LLU|FUN_016190-T1 | |
LLU|FUN_016191-T1 | DNA HELICASE RECQ FAMILY MEMBER |
LLU|FUN_016192-T1 | |
LLU|FUN_016193-T1 | |
LLU|FUN_016194-T1 | TRANSMEMBRANE PROTEIN KIAA1109 |
LLU|FUN_016195-T1 | |
LLU|FUN_016196-T1 | |
LLU|FUN_016197-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG |
LLU|FUN_016198-T1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
LLU|FUN_016199-T1 | DISCS LARGE |
LLU|FUN_016200-T1 | UNCHARACTERIZED |
LLU|FUN_016201-T1 | RFX TRANSCRIPTION FACTOR FAMILY |
LLU|FUN_016202-T1 | DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED |
LLU|FUN_016203-T1 | PEPTIDASE |
LLU|FUN_016204-T1 | |
LLU|FUN_016205-T1 | DISCS LARGE |
LLU|FUN_016206-T1 | DISCS LARGE |
LLU|FUN_016207-T1 | |
LLU|FUN_016208-T1 | |
LLU|FUN_016209-T1 | |
LLU|FUN_016210-T1 | |
LLU|FUN_016211-T1 | RHO GTPASE-ACTIVATING PROTEIN 100F |
LLU|FUN_016212-T1 | |
LLU|FUN_016213-T1 | RHO GTPASE-ACTIVATING PROTEIN 100F |
LLU|FUN_016214-T1 | RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED |
LLU|FUN_016215-T1 | PROTEIN FAM183B |
LLU|FUN_016216-T1 | |
LLU|FUN_016217-T1 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
LLU|FUN_016218-T1 | T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED |
LLU|FUN_016219-T1 | |
LLU|FUN_016220-T1 |