About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_016021-T1FATTY ACID SYNTHASE
LLU|FUN_016022-T1
LLU|FUN_016023-T1
LLU|FUN_016024-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_016025-T1
LLU|FUN_016026-T1
LLU|FUN_016027-T1
LLU|FUN_016028-T1
LLU|FUN_016029-T1
LLU|FUN_016030-T1
LLU|FUN_016031-T1
LLU|FUN_016032-T1OS10G0105400 PROTEIN
LLU|FUN_016033-T1OS10G0105400 PROTEIN
LLU|FUN_016034-T1
LLU|FUN_016035-T1
LLU|FUN_016036-T1INTERFERON REGULATORY FACTOR
LLU|FUN_016037-T1
LLU|FUN_016038-T1INTERFERON REGULATORY FACTOR
LLU|FUN_016039-T1NUCLEAR RECEPTOR COACTIVATOR 4
LLU|FUN_016040-T1
LLU|FUN_016041-T1
LLU|FUN_016042-T1
LLU|FUN_016043-T1
LLU|FUN_016044-T1
LLU|FUN_016045-T1ENDONUCLEASE-RELATED
LLU|FUN_016046-T1INTERFERON REGULATORY FACTOR
LLU|FUN_016047-T1
LLU|FUN_016048-T1
LLU|FUN_016049-T1UNCHARACTERIZED
LLU|FUN_016050-T1PDZ AND LIM DOMAIN PROTEIN ZASP
LLU|FUN_016051-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
LLU|FUN_016052-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
LLU|FUN_016053-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
LLU|FUN_016054-T1NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
LLU|FUN_016055-T1TRANSMEMBRANE ANCHOR PROTEIN 1
LLU|FUN_016056-T1EME1 PROTEIN
LLU|FUN_016057-T128S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL
LLU|FUN_016058-T1
LLU|FUN_016059-T1
LLU|FUN_016060-T1
LLU|FUN_016061-T1
LLU|FUN_016062-T1
LLU|FUN_016063-T1
LLU|FUN_016064-T1
LLU|FUN_016065-T1
LLU|FUN_016066-T1
LLU|FUN_016067-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
LLU|FUN_016068-T1
LLU|FUN_016069-T1
LLU|FUN_016070-T1LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
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