Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_015770-T1 | |
LLU|FUN_015771-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_015772-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_015773-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_015774-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_015775-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_015776-T1 | VESICULAR-FUSION PROTEIN NSF |
LLU|FUN_015777-T1 | COLLAGEN ALPHA |
LLU|FUN_015778-T1 | |
LLU|FUN_015779-T1 | COLLAGEN ALPHA |
LLU|FUN_015780-T1 | COLLAGEN ALPHA |
LLU|FUN_015781-T1 | COLLAGEN ALPHA |
LLU|FUN_015782-T1 | COLLAGEN ALPHA |
LLU|FUN_015783-T1 | |
LLU|FUN_015784-T1 | COLLAGEN ALPHA |
LLU|FUN_015785-T1 | COLLAGEN ALPHA |
LLU|FUN_015786-T1 | COLLAGEN ALPHA |
LLU|FUN_015787-T1 | COLLAGEN ALPHA |
LLU|FUN_015788-T1 | SYNAPTONEMAL COMPLEX PROTEIN-RELATED |
LLU|FUN_015789-T1 | |
LLU|FUN_015790-T1 | |
LLU|FUN_015791-T1 | RB1-INDUCIBLE COILED-COIL |
LLU|FUN_015792-T1 | RB1-INDUCIBLE COILED-COIL |
LLU|FUN_015793-T1 | |
LLU|FUN_015794-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_015795-T1 | |
LLU|FUN_015796-T1 | CALCIUM BINDING PROTEINS |
LLU|FUN_015797-T1 | CALCIUM BINDING PROTEINS |
LLU|FUN_015798-T1 | MRNA EXPORT FACTOR AND BUB3 |
LLU|FUN_015799-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
LLU|FUN_015800-T1 | |
LLU|FUN_015801-T1 | |
LLU|FUN_015802-T1 | ENVOPLAKIN |
LLU|FUN_015803-T1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
LLU|FUN_015804-T1 | |
LLU|FUN_015805-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 78 |
LLU|FUN_015806-T1 | SIGNAL PEPTIDE PEPTIDASE |
LLU|FUN_015807-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_015808-T1 | |
LLU|FUN_015809-T1 | LEUCOKININ RECEPTOR-RELATED |
LLU|FUN_015810-T1 | |
LLU|FUN_015811-T1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
LLU|FUN_015812-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
LLU|FUN_015813-T1 | |
LLU|FUN_015814-T1 | UNNAMED PRODUCT |
LLU|FUN_015815-T1 | |
LLU|FUN_015816-T1 | |
LLU|FUN_015817-T1 | |
LLU|FUN_015818-T1 | |
LLU|FUN_015819-T1 |