Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_015670-T1 | LD44032P |
LLU|FUN_015671-T1 | |
LLU|FUN_015672-T1 | |
LLU|FUN_015673-T1 | |
LLU|FUN_015674-T1 | |
LLU|FUN_015675-T1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
LLU|FUN_015676-T1 | |
LLU|FUN_015677-T1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
LLU|FUN_015678-T1 | P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED |
LLU|FUN_015679-T1 | UNCHARACTERIZED |
LLU|FUN_015680-T1 | |
LLU|FUN_015681-T1 | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 |
LLU|FUN_015682-T1 | |
LLU|FUN_015683-T1 | |
LLU|FUN_015684-T1 | |
LLU|FUN_015685-T1 | AMINOMETHYLTRANSFERASE |
LLU|FUN_015686-T1 | SARCOSINE DEHYDROGENASE-RELATED |
LLU|FUN_015687-T1 | SARCOSINE DEHYDROGENASE-RELATED |
LLU|FUN_015688-T1 | AMINOMETHYLTRANSFERASE |
LLU|FUN_015689-T1 | ZINC/IRON TRANSPORTER |
LLU|FUN_015690-T1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
LLU|FUN_015691-T1 | |
LLU|FUN_015692-T1 | |
LLU|FUN_015693-T1 | |
LLU|FUN_015694-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_015695-T1 | |
LLU|FUN_015696-T1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
LLU|FUN_015697-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_015698-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_015699-T1 | |
LLU|FUN_015700-T1 | |
LLU|FUN_015701-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_015702-T1 | |
LLU|FUN_015703-T1 | LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1 |
LLU|FUN_015704-T1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
LLU|FUN_015705-T1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
LLU|FUN_015706-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_015707-T1 | ARMADILLO-TYPE FOLD-RELATED |
LLU|FUN_015708-T1 | |
LLU|FUN_015709-T1 | |
LLU|FUN_015710-T1 | NETRIN RECEPTOR UNC5 |
LLU|FUN_015711-T1 | NETRIN RECEPTOR UNC5 |
LLU|FUN_015712-T1 | |
LLU|FUN_015713-T1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
LLU|FUN_015714-T1 | |
LLU|FUN_015715-T1 | FACIOGENITAL DYSPLASIA PROTEIN |
LLU|FUN_015716-T1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
LLU|FUN_015717-T1 | |
LLU|FUN_015718-T1 | CARNITINE O-ACYLTRANSFERASE |
LLU|FUN_015719-T1 |