About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_015467-T1
LLU|FUN_015468-T1TRANSMEMBRANE CHANNEL-RELATED
LLU|FUN_015469-T1
LLU|FUN_015470-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_015471-T1
LLU|FUN_015472-T1
LLU|FUN_015473-T1
LLU|FUN_015474-T1
LLU|FUN_015475-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_015476-T1
LLU|FUN_015477-T1
LLU|FUN_015478-T1
LLU|FUN_015479-T1PROTEIN CBG03580
LLU|FUN_015480-T1
LLU|FUN_015481-T1TRANSMEMBRANE CHANNEL-RELATED
LLU|FUN_015482-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_015483-T1
LLU|FUN_015484-T1PALMITOYLTRANSFERASE
LLU|FUN_015485-T1L-ASPARAGINASE
LLU|FUN_015486-T1
LLU|FUN_015487-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_015488-T1SCAVENGER RECEPTOR CLASS F
LLU|FUN_015489-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
LLU|FUN_015490-T1DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED
LLU|FUN_015491-T1UNCHARACTERIZED
LLU|FUN_015492-T1
LLU|FUN_015493-T1VOLTAGE-GATED POTASSIUM CHANNEL
LLU|FUN_015494-T1EPM2A-INTERACTING PROTEIN 1
LLU|FUN_015495-T1
LLU|FUN_015496-T1
LLU|FUN_015497-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
LLU|FUN_015498-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
LLU|FUN_015499-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
LLU|FUN_015500-T1
LLU|FUN_015501-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
LLU|FUN_015502-T1
LLU|FUN_015503-T1HOMEOBOX PROTEIN ARISTALESS
LLU|FUN_015504-T1
LLU|FUN_015505-T1
LLU|FUN_015506-T1
LLU|FUN_015508-T1
LLU|FUN_015509-T1
LLU|FUN_015510-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
LLU|FUN_015511-T1BETA TRANSDUCIN-RELATED PROTEIN
LLU|FUN_015512-T1
LLU|FUN_015513-T1
LLU|FUN_015514-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_015515-T1MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
LLU|FUN_015516-T1SYNTROPHIN
LLU|FUN_015517-T1
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