Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_015467-T1 | |
LLU|FUN_015468-T1 | TRANSMEMBRANE CHANNEL-RELATED |
LLU|FUN_015469-T1 | |
LLU|FUN_015470-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_015471-T1 | |
LLU|FUN_015472-T1 | |
LLU|FUN_015473-T1 | |
LLU|FUN_015474-T1 | |
LLU|FUN_015475-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_015476-T1 | |
LLU|FUN_015477-T1 | |
LLU|FUN_015478-T1 | |
LLU|FUN_015479-T1 | PROTEIN CBG03580 |
LLU|FUN_015480-T1 | |
LLU|FUN_015481-T1 | TRANSMEMBRANE CHANNEL-RELATED |
LLU|FUN_015482-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_015483-T1 | |
LLU|FUN_015484-T1 | PALMITOYLTRANSFERASE |
LLU|FUN_015485-T1 | L-ASPARAGINASE |
LLU|FUN_015486-T1 | |
LLU|FUN_015487-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_015488-T1 | SCAVENGER RECEPTOR CLASS F |
LLU|FUN_015489-T1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
LLU|FUN_015490-T1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED |
LLU|FUN_015491-T1 | UNCHARACTERIZED |
LLU|FUN_015492-T1 | |
LLU|FUN_015493-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
LLU|FUN_015494-T1 | EPM2A-INTERACTING PROTEIN 1 |
LLU|FUN_015495-T1 | |
LLU|FUN_015496-T1 | |
LLU|FUN_015497-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
LLU|FUN_015498-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
LLU|FUN_015499-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
LLU|FUN_015500-T1 | |
LLU|FUN_015501-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
LLU|FUN_015502-T1 | |
LLU|FUN_015503-T1 | HOMEOBOX PROTEIN ARISTALESS |
LLU|FUN_015504-T1 | |
LLU|FUN_015505-T1 | |
LLU|FUN_015506-T1 | |
LLU|FUN_015508-T1 | |
LLU|FUN_015509-T1 | |
LLU|FUN_015510-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
LLU|FUN_015511-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
LLU|FUN_015512-T1 | |
LLU|FUN_015513-T1 | |
LLU|FUN_015514-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_015515-T1 | MALONYL-COA ACP TRANSACYLASE, ACP-BINDING |
LLU|FUN_015516-T1 | SYNTROPHIN |
LLU|FUN_015517-T1 |