About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_015317-T1PLACENTAL PROTEIN 11-RELATED
LLU|FUN_015318-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
LLU|FUN_015319-T1N-LINKED OLIGOSACCHARIDE PROCESSING
LLU|FUN_015320-T1
LLU|FUN_015321-T1TESTICULAR HAPLOID EXPRESSED GENE PROTEIN
LLU|FUN_015322-T1HEPARANASE
LLU|FUN_015323-T1
LLU|FUN_015324-T1
LLU|FUN_015325-T1
LLU|FUN_015326-T1RNA METHYLASE-RELATED
LLU|FUN_015327-T1
LLU|FUN_015328-T1
LLU|FUN_015329-T1
LLU|FUN_015330-T1
LLU|FUN_015331-T1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 3, MITOCHONDRIAL
LLU|FUN_015332-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_015333-T1PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P
LLU|FUN_015334-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_015335-T1
LLU|FUN_015336-T1
LLU|FUN_015337-T1
LLU|FUN_015338-T1CRUMBS FAMILY MEMBER
LLU|FUN_015339-T1LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE
LLU|FUN_015340-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
LLU|FUN_015341-T1ALANYL-TRNA EDITING PROTEIN
LLU|FUN_015342-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
LLU|FUN_015343-T1
LLU|FUN_015344-T1
LLU|FUN_015345-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_015346-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_015347-T1
LLU|FUN_015348-T1
LLU|FUN_015349-T1
LLU|FUN_015350-T1
LLU|FUN_015351-T1
LLU|FUN_015352-T13-5 EXONUCLEASE
LLU|FUN_015353-T1
LLU|FUN_015354-T1SWIM-TYPE DOMAIN-CONTAINING PROTEIN
LLU|FUN_015355-T1
LLU|FUN_015356-T1
LLU|FUN_015357-T1
LLU|FUN_015358-T1
LLU|FUN_015359-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_015360-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_015361-T1REVERSE TRANSCRIPTASES
LLU|FUN_015362-T1
LLU|FUN_015363-T1OS10G0105400 PROTEIN
LLU|FUN_015364-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
LLU|FUN_015365-T1
LLU|FUN_015366-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
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