Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_015317-T1 | PLACENTAL PROTEIN 11-RELATED |
LLU|FUN_015318-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
LLU|FUN_015319-T1 | N-LINKED OLIGOSACCHARIDE PROCESSING |
LLU|FUN_015320-T1 | |
LLU|FUN_015321-T1 | TESTICULAR HAPLOID EXPRESSED GENE PROTEIN |
LLU|FUN_015322-T1 | HEPARANASE |
LLU|FUN_015323-T1 | |
LLU|FUN_015324-T1 | |
LLU|FUN_015325-T1 | |
LLU|FUN_015326-T1 | RNA METHYLASE-RELATED |
LLU|FUN_015327-T1 | |
LLU|FUN_015328-T1 | |
LLU|FUN_015329-T1 | |
LLU|FUN_015330-T1 | |
LLU|FUN_015331-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 3, MITOCHONDRIAL |
LLU|FUN_015332-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_015333-T1 | PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P |
LLU|FUN_015334-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_015335-T1 | |
LLU|FUN_015336-T1 | |
LLU|FUN_015337-T1 | |
LLU|FUN_015338-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_015339-T1 | LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE |
LLU|FUN_015340-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
LLU|FUN_015341-T1 | ALANYL-TRNA EDITING PROTEIN |
LLU|FUN_015342-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_015343-T1 | |
LLU|FUN_015344-T1 | |
LLU|FUN_015345-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
LLU|FUN_015346-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
LLU|FUN_015347-T1 | |
LLU|FUN_015348-T1 | |
LLU|FUN_015349-T1 | |
LLU|FUN_015350-T1 | |
LLU|FUN_015351-T1 | |
LLU|FUN_015352-T1 | 3-5 EXONUCLEASE |
LLU|FUN_015353-T1 | |
LLU|FUN_015354-T1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_015355-T1 | |
LLU|FUN_015356-T1 | |
LLU|FUN_015357-T1 | |
LLU|FUN_015358-T1 | |
LLU|FUN_015359-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_015360-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_015361-T1 | REVERSE TRANSCRIPTASES |
LLU|FUN_015362-T1 | |
LLU|FUN_015363-T1 | OS10G0105400 PROTEIN |
LLU|FUN_015364-T1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
LLU|FUN_015365-T1 | |
LLU|FUN_015366-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |