Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_015017-T1 | |
LLU|FUN_015018-T1 | TPR REPEAT CONTAINING PROTEIN |
LLU|FUN_015019-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP205 |
LLU|FUN_015020-T1 | NAD DEPENDENT EPIMERASE/DEHYDRATASE |
LLU|FUN_015021-T1 | |
LLU|FUN_015022-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_015023-T1 | |
LLU|FUN_015024-T1 | |
LLU|FUN_015025-T1 | |
LLU|FUN_015026-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_015027-T1 | |
LLU|FUN_015028-T1 | |
LLU|FUN_015029-T1 | |
LLU|FUN_015030-T1 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
LLU|FUN_015031-T1 | HEAT SHOCK TRANSCRIPTION FACTOR |
LLU|FUN_015032-T1 | METAXIN RELATED |
LLU|FUN_015033-T1 | M-PHASE PHOSPHOPROTEIN 6 |
LLU|FUN_015034-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
LLU|FUN_015035-T1 | |
LLU|FUN_015036-T1 | METALLO PHOSPHOESTERASE RELATED |
LLU|FUN_015037-T1 | UNCHARACTERIZED |
LLU|FUN_015038-T1 | |
LLU|FUN_015039-T1 | |
LLU|FUN_015040-T1 | |
LLU|FUN_015041-T1 | CATION-TRANSPORTING ATPASE-RELATED |
LLU|FUN_015042-T1 | |
LLU|FUN_015043-T1 | |
LLU|FUN_015044-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_015045-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_015046-T1 | |
LLU|FUN_015047-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_015048-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_015049-T1 | |
LLU|FUN_015050-T1 | |
LLU|FUN_015051-T1 | |
LLU|FUN_015052-T1 | |
LLU|FUN_015053-T1 | OS10G0105400 PROTEIN |
LLU|FUN_015054-T1 | OS10G0105400 PROTEIN |
LLU|FUN_015055-T1 | PROPERDIN |
LLU|FUN_015056-T1 | |
LLU|FUN_015057-T1 | |
LLU|FUN_015058-T1 | |
LLU|FUN_015059-T1 | |
LLU|FUN_015060-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_015061-T1 | |
LLU|FUN_015062-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_015063-T1 | |
LLU|FUN_015064-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_015065-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
LLU|FUN_015066-T1 | FAT ATYPICAL CADHERIN-RELATED |