Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013270.1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| CAI8013269.1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| CAI8013272.1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| CAI8013275.1 | PROTEIN AF-9 HOMOLOG |
| CAI8013274.1 | |
| CAI8013276.1 | PROTEIN AF-9 HOMOLOG |
| CAI8013277.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8013279.1 | GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN |
| CAI8013278.1 | GMP SYNTHASE-RELATED |
| CAI8013283.1 | UNCHARACTERIZED |
| CAI8013281.1 | UNCHARACTERIZED |
| CAI8013282.1 | UNCHARACTERIZED |
| CAI8013280.1 | UNCHARACTERIZED |
| CAI8013284.1 | UNCHARACTERIZED |
| CAI8013285.1 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
| CAI8013286.1 | OTU DOMAIN CONTAINING PROTEIN |
| CAI8013287.1 | MITOCHONDRIAL ATPASE COMPLEX SUBUNIT ATP10 |
| CAI8013288.1 | FORKHEAD BOX PROTEIN |
| CAI8013289.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 3 |
| CAI8013290.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8013291.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8013292.1 | |
| CAI8013294.1 | |
| CAI8013293.1 | TYPE-1 ANGIOTENSIN II RECEPTOR-ASSOCIATED PROTEIN |
| CAI8013295.1 | |
| CAI8013297.1 | - |
| CAI8013296.1 | |
| CAI8013298.1 | |
| CAI8013299.1 | SELENOPROTEIN K |
| CAI8013300.1 | |
| CAI8013301.1 | |
| CAI8013302.1 | |
| CAI8013303.1 | |
| CAI8013304.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8013305.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8013306.1 | ACYL CARRIER PROTEIN |
| CAI8013307.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8013308.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8013310.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI8013311.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI8013309.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI8013312.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI8013313.1 | LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC |
| CAI8013315.1 | HOMOSERINE DEHYDROGENASE |
| CAI8013314.1 | HOMOSERINE DEHYDROGENASE |
| CAI8013316.1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
| CAI8013317.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8013318.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8013319.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8013320.1 |
