Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013020.1 | |
| CAI8013028.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013027.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013026.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013025.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013024.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013023.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013022.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013029.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013030.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8013031.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8013032.1 | COV-LIKE PROTEIN 1 |
| CAI8013033.1 | |
| CAI8013034.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8013035.1 | PEPTIDASE M20 |
| CAI8013036.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8013037.1 | |
| CAI8013038.1 | L-ASPARAGINASE |
| CAI8013039.1 | L-ASPARAGINASE |
| CAI8013040.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8013041.1 | ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT |
| CAI8013042.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8013043.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8013044.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI8013045.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI8013046.1 | RECOMBINATION PROTEIN RECR |
| CAI8013047.1 | RECOMBINATION PROTEIN RECR |
| CAI8013048.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8013049.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8013050.1 | UVRABC SYSTEM PROTEIN A |
| CAI8013051.1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
| CAI8013052.1 | ENDORIBONUCLEASE-RELATED |
| CAI8013053.1 | OSJNBB0011N17.9 PROTEIN |
| CAI8013054.1 | AMIDOHYDROLASE |
| CAI8013055.1 | ALKYL HYDROPEROXIDE REDUCTASE AHPD |
| CAI8013056.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8013057.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8013058.1 | SACSIN |
| CAI8013059.1 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
| CAI8013060.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI8013061.1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
| CAI8013062.1 | UNCHARACTERIZED PROTEIN YKGE |
| CAI8013063.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8013064.1 | LACTATE UTILIZATION PROTEIN C |
| CAI8013065.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8013066.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8013067.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8013068.1 | SI:CH211-175M2.5 |
| CAI8013070.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8013069.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
