Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012771.1 | CTP SYNTHASE |
| CAI8012772.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8012774.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8012773.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8012775.1 | |
| CAI8012776.1 | EXONUCLEASE |
| CAI8012777.1 | EXODEOXYRIBONUCLEASE 7 SMALL SUBUNIT |
| CAI8012778.1 | |
| CAI8012779.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8012780.1 | ELONGATION FACTOR P |
| CAI8012782.1 | AMINOPEPTIDASE |
| CAI8012781.1 | AMINOPEPTIDASE |
| CAI8012783.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8012784.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8012785.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8012786.1 | PROTEIN SMF |
| CAI8012787.1 | PHOSPHOSERINE PHOSPHATASE |
| CAI8012788.1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
| CAI8012789.1 | PYRUVATE KINASE |
| CAI8012790.1 | PYRUVATE KINASE |
| CAI8012791.1 | |
| CAI8012792.1 | |
| CAI8012793.1 | METHIONINE--TRNA LIGASE |
| CAI8012798.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8012797.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8012796.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8012795.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8012794.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8012800.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8012799.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8012801.1 | |
| CAI8012802.1 | |
| CAI8012803.1 | |
| CAI8012804.1 | |
| CAI8012806.1 | |
| CAI8012805.1 | |
| CAI8012807.1 | |
| CAI8012808.1 | |
| CAI8012809.1 | - |
| CAI8012810.1 | - |
| CAI8012811.1 | |
| CAI8012812.1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| CAI8012813.1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| CAI8012814.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B |
| CAI8012818.1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| CAI8012819.1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| CAI8012817.1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| CAI8012816.1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| CAI8012815.1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
| CAI8012823.1 | GABA-B RECEPTOR |
